View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_high_12 (Length: 371)
Name: NF17464_high_12
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_high_12 |
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| [»] scaffold0388 (1 HSPs) |
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Alignment Details
Target: scaffold0388 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold0388
Description:
Target: scaffold0388; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 8773 - 8419
Alignment:
| Q |
1 |
taaactcaaataaatcaatccaaacatgcataagcctacaca-acaa--acatcaaacacaacttcatcttctattatctacatgatcaccatatcataa |
97 |
Q |
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|||||||||||||||||||||||||||| |||||| | |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8773 |
taaactcaaataaatcaatccaaacatgtataagcgtgcacacacaacaacatcaaacacaacttcatcttctattatctacatgatcaccatatcataa |
8674 |
T |
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| Q |
98 |
caacgttacatattttcaactggtccaattgctggaacctgatgcaatccaggtcttgatccgttcaaactccgtaaacctacatggtatcgtaatccca |
197 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673 |
caacgttacatattttcaactggtccaatttctggaacctgatgcaatccaggtcttgatccgttcaaactccgtaaacctacatggtatcgtaatccca |
8574 |
T |
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| Q |
198 |
ccttgatgattaaatccatactcctcttcaacatctttaagcaattcactaaacaatgggtggttaaagtatatcactggcaccataaccctatttacct |
297 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
8573 |
ccttgatggttaaatccatactcctcttcaacgtctttaagcaattcactaaacaatggatggttaaagtatatcactggcaccataaccctatttatct |
8474 |
T |
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| Q |
298 |
cttcctctttatgtcccacatacacgaccatttgtcccttcggcacgctgaattt |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8473 |
cttcctctttatgtcccacatacacgaccatttgtcccttcggcacgctgaattt |
8419 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1231243 - 1231215
Alignment:
| Q |
1 |
taaactcaaataaatcaatccaaacatgc |
29 |
Q |
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| T |
1231243 |
taaactcaaataaatcaatccaaacatgc |
1231215 |
T |
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