View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17464_high_46 (Length: 201)

Name: NF17464_high_46
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17464_high_46
NF17464_high_46
[»] chr5 (2 HSPs)
chr5 (13-201)||(9606304-9606492)
chr5 (58-200)||(9590659-9590799)
[»] chr8 (9 HSPs)
chr8 (13-197)||(6455991-6456175)
chr8 (13-201)||(6449524-6449712)
chr8 (141-201)||(6262205-6262265)
chr8 (147-201)||(6351209-6351263)
chr8 (147-201)||(7457950-7458004)
chr8 (147-201)||(7470352-7470406)
chr8 (148-201)||(6273421-6273474)
chr8 (147-200)||(6287671-6287724)
chr8 (148-201)||(6330762-6330815)
[»] chr2 (1 HSPs)
chr2 (61-201)||(42689657-42689797)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 9606492 - 9606304
Alignment:
Q  13 aatatctcaatcacagaaagatcaattaaggtttgatatttaggtgtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcg 112  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606492 aatatctcaatcacagaaagatcaattagggtttgatattttggtgtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcg 9606393  T
Q  113 gagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606392 gagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct 9606304  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 9590799 - 9590659
Alignment:
Q  58 gtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcggagttcctttctccgggatccatcttcgactaagtgttggacggt 157  Q
    ||||||||||||||||||| |||||| || ||||||||||| || ||||| |   ||||||||||||| || |||||||||  || || | |||||||||    
T  9590799 gtaattgttctcaaatatggcttttggggatttttcaccatttcttcatattcaagagttcctttctctggtatccatcttttaccaactattggacggt 9590700  T
Q  158 ttagaatataacctccataaggatattgtccaaaattaacagc 200  Q
    |||| ||| ||| ||  ||||||||||||||||| ||||||||    
T  9590699 ttaggataaaacatc--taaggatattgtccaaagttaacagc 9590659  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 6455991 - 6456175
Alignment:
Q  13 aatatctcaatcacagaaagatcaattaaggtttgatatttaggtgtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcg 112  Q
    |||||||||||||||||||||||||| | ||| ||| | || |||||||| ||||||||||| |||||||||||  ||||||||||||||||||| | ||    
T  6455991 aatatctcaatcacagaaagatcaatgagggtctgaaactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcatactccg 6456090  T
Q  113 gagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaac 197  Q
    ||||||||| |||||| ||  |||||| |||||| ||||||||||| || ||||| |||||||||||||| |||||||| |||||    
T  6456091 gagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaac 6456175  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 6449524 - 6449712
Alignment:
Q  13 aatatctcaatcacagaaagatcaattaaggtttgatatttaggtgtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcg 112  Q
    |||||||| ||||||||||||||||  | ||||||||| || |||||||| ||||||||||| |||||||||||  |||||||||||||||| || | ||    
T  6449524 aatatctcgatcacagaaagatcaacaagggtttgatactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcgtattccg 6449623  T
Q  113 gagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct 201  Q
    ||||||||  |||||| ||  |||||| ||||| |||||||||||| || ||||| ||||| |||||||||||||| ||||||||||||    
T  6449624 gagttcctggctccggaataaatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaaattaacagct 6449712  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 6262205 - 6262265
Alignment:
Q  141 actaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct 201  Q
    |||||| |||||||||||||  ||  |||||||||| ||||||||||||||||||||||||    
T  6262205 actaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagct 6262265  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 6351209 - 6351263
Alignment:
Q  147 tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct 201  Q
    |||||| ||||| || ||||| |||||||| ||||||||||| ||||||||||||    
T  6351209 tgttggccggttaaggatatatcctccatatggatattgtccgaaattaacagct 6351263  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 7457950 - 7458004
Alignment:
Q  147 tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct 201  Q
    |||||| ||||| || ||||| |||||||| | ||||||||||||||||||||||    
T  7457950 tgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagct 7458004  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 7470352 - 7470406
Alignment:
Q  147 tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct 201  Q
    |||||| ||||| || ||||| |||||||| | ||||||||||||||||||||||    
T  7470352 tgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagct 7470406  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 6273421 - 6273474
Alignment:
Q  148 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagct 201  Q
    ||||| ||||| ||||| ||||| || || ||||||||||||||||||||||||    
T  6273421 gttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagct 6273474  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 6287671 - 6287724
Alignment:
Q  147 tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagc 200  Q
    |||||| ||||| ||||| ||||| || || |||||||||||||||||||||||    
T  6287671 tgttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagc 6287724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 6330762 - 6330815
Alignment:
Q  148 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagct 201  Q
    ||||| ||||| || ||||| |||||||| |||||||| |||||||||||||||    
T  6330762 gttggtcggttaagtatatatcctccatatggatattgaccaaaattaacagct 6330815  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 42689797 - 42689657
Alignment:
Q  61 attgttctcaaatatgccttttgagggtttttcaccatctcatcataattcggagttcctttctccgggatccatcttcgactaagtgttggacggttta 160  Q
    ||||||||||| || |||||||||||  | |||||||| |||||||| |  | |||||||| ||| || |   |||||| ||| |  ||||| |||||||    
T  42689797 attgttctcaagtaagccttttgaggactcttcaccatttcatcatattgtgcagttccttcctcaggaagtaatcttctactgatagttgggcggttta 42689698  T
Q  161 gaatataacctccataaggatattgtccaaaattaacagct 201  Q
    ||||| |||| || |||||||||||||||||||||||||||    
T  42689697 gaataaaaccgccgtaaggatattgtccaaaattaacagct 42689657  T

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