View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_10 (Length: 451)
Name: NF17464_low_10
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 6 - 435
Target Start/End: Complemental strand, 53365155 - 53364726
Alignment:
| Q |
6 |
gacatcatcatacattaccaacctcctttctaaaacgatgggaataggataggtgtatgtctactttagtttcatgggtctgttactaagtgtatataca |
105 |
Q |
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| T |
53365155 |
gacatcataacacattaccaacctcctttctaaaacgatgggaataggataggtgtatgtctactttagtttcatgggtctgttactaagtgtatataca |
53365056 |
T |
|
| Q |
106 |
ttcatcgtaaaatattgtttaatgcaacttccactatactactatttgcattggttgcaagataatgcaagcttaaatttcaagttgtttatgtgtcaag |
205 |
Q |
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| T |
53365055 |
ttcatcgtaaaatattgtttaatgcaacttccactatactactatttgcattggttgcaagataatgcaagcttaaatttcaagttgtttatgtgtcaag |
53364956 |
T |
|
| Q |
206 |
attcggtatttatttatagtgaatactttattttttaggtggactgctgcaccttaacaaattgtaatgatatcgcttatctgtcttcacctctggcccc |
305 |
Q |
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| T |
53364955 |
attcggtatttatttatagtgaatactttattttttaggtggactgctgcaccttaacaaattgtaatgatatcgcttatctgtcttcacctctggcccc |
53364856 |
T |
|
| Q |
306 |
tttccttccctagctgttgaaatgaatttagtctccttcattattctaacaccctctaactcccacttcagcatttaaggaacttttgctttcagaaaaa |
405 |
Q |
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| T |
53364855 |
tttccttccctagctgttgtaatgaatttagtctccttcgttaatctaacaccctctaactcccacttcaacatttaaggaacttttgctttcagaaaaa |
53364756 |
T |
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| Q |
406 |
cgatgaaaaaataaatctataacttacaaa |
435 |
Q |
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| T |
53364755 |
cgatgaaaaaataaatctataacttacaaa |
53364726 |
T |
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