View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_11 (Length: 424)
Name: NF17464_low_11
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Complemental strand, 2504547 - 2504158
Alignment:
| Q |
15 |
atcaacactagtcattattaaaaaagacagtttccaaatctagcaaagcttttggattctgtactacactatctattgatcttttggatctactacctct |
114 |
Q |
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| T |
2504547 |
atcaacactagtcattattaaaaaagacagtttccaaatctagcaaagcttttggattctgtactacactatctattgatcttttggatctactacctct |
2504448 |
T |
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| Q |
115 |
tcctccttatttgtgatggattagtaaccactaatcagcatggcttgtctctatctgattattatagtaaaacaataatctaatgcccacttttccacca |
214 |
Q |
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| T |
2504447 |
tcctccttatttgtgatggattagtaaccactaatcagcatggcttgtctctatctgattattatagtaaaccaatgatctaatgcccacttttccacca |
2504348 |
T |
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| Q |
215 |
taattgtttcccctagactctatcattactgttccgcgtaggtagctcagccggtgatctaagggataccgaagaagttttaagaatgagatccaggatt |
314 |
Q |
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| T |
2504347 |
taattgttt-ccctagactctatcattactgttccgcgtaggtagctcagccggtgatctaagggataccgaagaagttttaagaatgagatccaggatt |
2504249 |
T |
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| Q |
315 |
cgaactctgaaaactaacataactactaatttactaacgattgtctataaannnnnnnnnnnncattgttagtatttgttcaattccaattct |
407 |
Q |
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| T |
2504248 |
cgaactctgaaaactaacataactactaatttactaacgactgtctataaa--aaatatatatcattgttagtatttgttcaattccaattct |
2504158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 1159431 - 1159507
Alignment:
| Q |
267 |
ggtgatctaagggataccgaagaagttttaagaatgagatccaggattcgaactctgaaaactaacataactactaa |
343 |
Q |
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| T |
1159431 |
ggtgagctaaggaatatcgaagaagttttaagaaagaggtctaagattcaaaccctgaaaactaacataaccactaa |
1159507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 29257990 - 29258026
Alignment:
| Q |
326 |
aactaacataactactaatttactaacgattgtctat |
362 |
Q |
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| T |
29257990 |
aactaacataactactaatttattaacaattgtctat |
29258026 |
T |
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