View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_12 (Length: 406)
Name: NF17464_low_12
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 91 - 396
Target Start/End: Original strand, 7934640 - 7934946
Alignment:
| Q |
91 |
cattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttagattaaaaaataataattggtcataagataccatttagtga |
190 |
Q |
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| T |
7934640 |
cattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttagattaaaaaataataattggtcataagataccatttagtga |
7934739 |
T |
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| Q |
191 |
ctacctatgatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagtttgctttgttgggaacaatgtttatctccattacaaa |
290 |
Q |
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| T |
7934740 |
ctacctaggatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagtttgctttgttgggaacaatgtttgtctccattacaaa |
7934839 |
T |
|
| Q |
291 |
caaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatgcaatggcctt-gcataattgtccacactgataccctc |
389 |
Q |
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| T |
7934840 |
caaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatgcaatggccttcacataattgtccacactgataccctc |
7934939 |
T |
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| Q |
390 |
ccctttg |
396 |
Q |
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||||||| |
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| T |
7934940 |
ccctttg |
7934946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 7934510 - 7934640
Alignment:
| Q |
1 |
atttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcgttattctttcattccattgttaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7934510 |
atttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcattattctttcattccattgttaca |
7934609 |
T |
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| Q |
101 |
atatgtgccatagacgagttctttgtttctc |
131 |
Q |
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| T |
7934610 |
atatgtgccatagacgagttctttgtttctc |
7934640 |
T |
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