View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17464_low_13 (Length: 381)
Name: NF17464_low_13
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 26277007 - 26277175
Alignment:
| Q |
17 |
agagctctaagatatagaaaagatatagaagcttcatttattagtttgtagttgatttattcatattgaagagattaatttcttctactcactcacattg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26277007 |
agagctctaagatatagaaaagatatagaagcttcatttattagtttgtagttgatttattcatattgaagagattaatttcttctactcactcacattg |
26277106 |
T |
|
| Q |
117 |
taaaactttttccaactacatgtgcaataaagttttacatattgaatgcaaattaaattttataattaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
26277107 |
taaaactttttccaactacatgtgcaataaagttttacatgttgaatgcaaattaaattttatatttaa |
26277175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 182 - 324
Target Start/End: Original strand, 26277365 - 26277507
Alignment:
| Q |
182 |
ttaattgttgggtaaaataaatcaaacatcattagaagaattaaaaaagttacaagaattaaaaagttatagtcacgcaacgtaactcatatggtaaaac |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
26277365 |
ttaattgttgggtaaaataaatcaaacatcattagaagaattaaaaaagttacaagaattaaaaagttagagtcacgcaacgcaactcatatggtaaaac |
26277464 |
T |
|
| Q |
282 |
attgtaagaacgtttgatatttagggtcaccactttttattct |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26277465 |
attgtaagaacgtttgatatttagggtcaccactttttattct |
26277507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 26277594 - 26277641
Alignment:
| Q |
323 |
ctgtttatgaagaaaaagagagccttctttttctatttatttattcat |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26277594 |
ctgtttatgaagaaaaagagagccttctttttcgatttatttattcat |
26277641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University