View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_16 (Length: 350)
Name: NF17464_low_16
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 47544510 - 47544743
Alignment:
| Q |
11 |
ccaagaatataacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagt |
110 |
Q |
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| T |
47544510 |
ccaaaaatataacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagt |
47544609 |
T |
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| Q |
111 |
aaaacttgttatagaaacctactacttggatcaatactctctgcaaaccgaaatgccttaagcttacacagttagaacatcggtgactacttagattaag |
210 |
Q |
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| T |
47544610 |
aaaacttgttatagaaacctactacttggatcaatactctctccaaaccggaatgccttaagcttacgcagtcagaacatcggagactacttagattaag |
47544709 |
T |
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| Q |
211 |
ttcggatgatcgagattcaacctcggtgcattga |
244 |
Q |
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| T |
47544710 |
tttggatgatcgagattcaacctcggtgcattga |
47544743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 21 - 332
Target Start/End: Original strand, 47528411 - 47528730
Alignment:
| Q |
21 |
aacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaacttgtt |
120 |
Q |
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| T |
47528411 |
aacaattctgctgttgacaacagaatattaaaagctgatgttgaaacattaagagcgaaggtaagtccttgatttaactactttactagtaaaactggtt |
47528510 |
T |
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| Q |
121 |
atagaaacctactacttggatcaatactctctgcaaaccgaaatgccttaagcttacacagttagaacatcggtgactacttagattaagttcggatgat |
220 |
Q |
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| T |
47528511 |
atagaagcctactacttggatcaaaattctctgcaatttg-aatgccttgagtttacgcagtcagcacattggtgactacttagattaagatcggatgct |
47528609 |
T |
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| Q |
221 |
cgagattcaacctcggtgcatt----------gaagaatcaaaatcaggcttattttgtgaactatccgatctgaatccaatatcaaccaatgcactgac |
310 |
Q |
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| T |
47528610 |
tgagattcaacctcggtgctttggattttcaagaagaatcagaatc-ttcttattttgtgaaatgtccgatctgaatccagtagtagccattgcactgat |
47528708 |
T |
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| Q |
311 |
tgcgtgaatgcagcaatattcc |
332 |
Q |
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| T |
47528709 |
tgcgtgaatccagcgatattcc |
47528730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 45123854 - 45123787
Alignment:
| Q |
262 |
tattttgtgaactatccgatctgaatccaatatcaaccaatgcactgactgcgtgaatgcagcaatat |
329 |
Q |
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| T |
45123854 |
tattttgtgaactatccgatccgaatccaatggtcaccaatgcattgacaacgtgaatgcaggaatat |
45123787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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