View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_20 (Length: 317)
Name: NF17464_low_20
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 47 - 310
Target Start/End: Complemental strand, 4510790 - 4510527
Alignment:
| Q |
47 |
acatggtaggccaaaaacacttaccgaagaaggacgaactccaccaagtgctgtatatagagaaagttttcctattggaattcccatcccctgaaaatac |
146 |
Q |
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| T |
4510790 |
acatggtaggccaaaaacacttaccgaagaaggacgaactccaccaagtgctgtatatagagaaagttttcctattggaattcccatcccctgaaaatac |
4510691 |
T |
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| Q |
147 |
aacatgcattattaccaaaggagatattacagtgtcagatcatatgaatataatgatcataatatttgcaatcaaatataagagaaattacttgacaacc |
246 |
Q |
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| T |
4510690 |
aacatgcattattaccaaaggagatattacagtgtcagatcatatgaatataatgatcataatatttgcaatcaaatataagagaaattacttgacaacc |
4510591 |
T |
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| Q |
247 |
aagatccccaagtcccaagatccgctctccgtcagttacaacaatgacttgaatgttcatctca |
310 |
Q |
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| T |
4510590 |
aagatccccaagtcccaagatccgctctccgtcagttacaacaatgacttgaatgttcttctca |
4510527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 43208364 - 43208419
Alignment:
| Q |
245 |
ccaagatccccaagtcccaagatccgctctccgtcagttacaacaatgacttgaat |
300 |
Q |
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| T |
43208364 |
ccaagatctccgagtcctaaaatccgctcaccgtcagttacaacaataacttgaat |
43208419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 43433952 - 43434031
Alignment:
| Q |
231 |
aaattacttgacaaccaagatccccaagtcccaagatccgctctccgtcagttacaacaatgacttgaatgttcatctca |
310 |
Q |
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| T |
43433952 |
aaattacctgacaacctagatccccaagacccaagatccgttctccgtcagttacgactatgacttgaatgttcttctca |
43434031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 43433791 - 43433864
Alignment:
| Q |
75 |
gaaggacgaactccaccaagtgctgtatatagagaaagttttcctattggaattcccatcccctgaaaatacaa |
148 |
Q |
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| T |
43433791 |
gaaggacgaactcctcctagtgcagtatataaagaaagttttcccacaggtattcccattccctaagaatacaa |
43433864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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