View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_23 (Length: 312)
Name: NF17464_low_23
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_23 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 312
Target Start/End: Original strand, 15811384 - 15811700
Alignment:
| Q |
3 |
atcagtgaccccttggaaagtaaagctttggatttagacactcagaatttcattgttgttagatatgaatctgttttatgatatgccatttgacaaatca |
102 |
Q |
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| T |
15811384 |
atcagtgaccccttggaaagtaaagctttggatttagacactcagaatttcattgttgttagatatgaatctgttttatgatatgccatttgacaaatca |
15811483 |
T |
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| Q |
103 |
aatcctacttctcatgtatctgtgcggttttagctttggactgtgtttttctcacgc-------ttgatgtttgtatgtatagacctctagacatgttct |
195 |
Q |
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| T |
15811484 |
aatcctacttctcatgtttctgtgcggttttagctttggactgtgtttttctcacgcttgatgtttgatgtttgtatgtatagacctctagacatgctct |
15811583 |
T |
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| Q |
196 |
ctgcttttttgttttatctgtctcaggtcacaaggccagtgctgtttccatgttccgcagtactgcataaagagaagcttgtttaattgcaatcatcaca |
295 |
Q |
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| T |
15811584 |
ctgattgtttgttttatctgtctcaggtcacaaggccagtgctgtttccatgttccggggtactgcataaagagaagcttgtttaattgcaatcatcaca |
15811683 |
T |
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| Q |
296 |
gatgtcgtggtttaacc |
312 |
Q |
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| T |
15811684 |
gatgtcgtggtttaacc |
15811700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 15797807 - 15797862
Alignment:
| Q |
97 |
aaatcaaatcctacttctcatgtatctgtgcggttttagctttggactgtgttttt |
152 |
Q |
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| T |
15797807 |
aaatcaaatcgtacttctcatgtttatgggtggttttagctttggacggtgttttt |
15797862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 15797947 - 15798000
Alignment:
| Q |
217 |
ctcaggtcacaaggccagtgctgtttccatgttccgcagtactgcataaagaga |
270 |
Q |
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| T |
15797947 |
ctcaggtcacaaggtcagtaccgtttccatgtttcggggtactgcataaagaga |
15798000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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