View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17464_low_25 (Length: 304)

Name: NF17464_low_25
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17464_low_25
NF17464_low_25
[»] chr7 (1 HSPs)
chr7 (20-304)||(31215248-31215532)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 31215248 - 31215532
Alignment:
Q  20 aggaggaaacatgttgagtggaacaataccaaaagaagttatgaagttgcccttgttacggaacttgaacttgagcaaaaacaaaattgaagggaaaatt 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31215248 aggaggaaacatgttgagtggaacaataccaaaagaagttgtgaagttgcccttgttacggaacttgaacttgagcaaaaacaaaattaaagggaaaatt 31215347  T
Q  120 ccctcagactttgtcctgtcacagcctcttgaatctcttgatcttagtgggaatttgttgagtggaacaataccatcagtgctaggagagttgaagcaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31215348 ccctcagactttgtcctgtcacagcctcttgaatctcttgatcttagtgggaatttgttgagtggaacaataccatcagtgctaggagagttgaagcaat 31215447  T
Q  220 tgcaaatgctaaacctgtcatgcaataatctttctggcactattccaaccagttttgaggatgcacagtcaagcttgacctatgt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31215448 tgcaaatgctaaacctgtcatgcaataatctttctggcactattccaaccagttttgaggatgcacagtcaagcttgacctatgt 31215532  T

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