View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_27 (Length: 297)
Name: NF17464_low_27
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 51728802 - 51729085
Alignment:
| Q |
1 |
tcctctatcatgattagcataaatcaagctattagtttctctagtatattcatttaatttcaaagcgcgaaatgaatcacaaacaagtacttcttacctg |
100 |
Q |
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| T |
51728802 |
tcctctatcatgattagcataaatcaagctattagtttctctagtatattcatttaatttcaaagcgcgaaatgaatcacaaacaagtacttcttacctg |
51728901 |
T |
|
| Q |
101 |
tacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaagga |
200 |
Q |
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| T |
51728902 |
tacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccattaaaaccagttgcaagga |
51729001 |
T |
|
| Q |
201 |
tcactacatcggcttccacctcagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgcttttttaagta |
284 |
Q |
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| T |
51729002 |
tcactacatcggcttccacctcagtgttatcttcaaattcgattccttcattacaaaaccaccactttgatgcttttttaagta |
51729085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 279
Target Start/End: Complemental strand, 19056891 - 19056734
Alignment:
| Q |
122 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
221 |
Q |
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||||| ||||||| |||| ||||||||||||| ||||||||||||| ||| || || |||||| ||||||||||||| | || ||||| || || | | |
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| T |
19056891 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19056792 |
T |
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| Q |
222 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
279 |
Q |
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| T |
19056791 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19056734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 279
Target Start/End: Original strand, 19188308 - 19188465
Alignment:
| Q |
122 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
221 |
Q |
| |
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||||| ||||||| |||| ||||||||||||| ||||||||||||| ||| || || |||||| ||||||||||||| | || ||||| || || | | |
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| T |
19188308 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19188407 |
T |
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| Q |
222 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
279 |
Q |
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|||||| || ||||||| |||||| |||| ||||| ||||||||||||||| |||| |
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|
| T |
19188408 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19188465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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