View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_28 (Length: 297)
Name: NF17464_low_28
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 7161520 - 7161794
Alignment:
| Q |
13 |
catacctcttctatatacaaaatgtttgtcatacaaaccaaaaacttctnnnnnnnttagtgatttttaccggactaagtaaaggaaaacatagtctttg |
112 |
Q |
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| T |
7161520 |
catacctcttctatatacaaaatgtttgtcatacaaaccaaaaacttctaaaaaaattagtgatttttaccggactaagtaaaggaaaacatagtctttg |
7161619 |
T |
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| Q |
113 |
gtggtggagctacgtgttgccctagtcgttagaggatttggggttacaaccttctccttttgtgattcttgagaggatttcagcatctgcgagataaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7161620 |
gtggtggagctacgtgttgccctagtcgttagaggatttggggttacaaccttctccttttgtgattcttgagaggatttcagcatctgcgagagaaaag |
7161719 |
T |
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| Q |
213 |
caaaaataataattacagaaggaaaattctggaagttgttaagattataatg--ataagacaatatggtcacctt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
7161720 |
ataaaataataattacagaaggaaaattctggaagttgttaagattataatgatataagacaatatggttacctt |
7161794 |
T |
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