View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_3 (Length: 541)
Name: NF17464_low_3
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 16382071 - 16381788
Alignment:
| Q |
14 |
atattcaatcaaatcaaaccaaggctctttgctcatcatttccatgttcactttgttacactaaaataggaaaagagcaagcaactcatggaagctttat |
113 |
Q |
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| T |
16382071 |
atattcaatcaaatcaaaccaaggctctttgctcatcatttccatgttcactttgttacactaaaataggaaaagagcaagcaactcatggaagctttat |
16381972 |
T |
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| Q |
114 |
gggatttggtagacaaattgaagatttcaacactaggtgctattcttctacttgcatgtgcattttttgcacttgtttgtctttgcactattattgtact |
213 |
Q |
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| T |
16381971 |
gggatttggtagacaaattgaagatttcaacactaggtgctattcttctacttgcatgtgcattttttgcacttgtttgtctttgcactattattgtact |
16381872 |
T |
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| Q |
214 |
aaaaaggaaaggtagtaataataata---ataaggttttgaaccaagagggtgttatagaagagaatgagtctagttcgactat |
294 |
Q |
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| T |
16381871 |
aaaaaggaaaggtagtaataataataataataaggttttgaaccaagagggtgttatagaagagaatgagtctagttcgactat |
16381788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 367 - 527
Target Start/End: Complemental strand, 16381715 - 16381555
Alignment:
| Q |
367 |
agaatggttagaaccaaattgtggatggatttcagtgaaaagggtgttgatgggttcaatggtgtggagcaaggcaagaaaattggaagagagtattaga |
466 |
Q |
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| T |
16381715 |
agaatggttagaaccaaattgtggatggatttcagtgaaaagggtgttgatgggttcaatggtgtggagcaaggcaagaaaattggaagagagtattaga |
16381616 |
T |
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| Q |
467 |
tggcagagagagaggggatcaccattgcttggaagtttacaaaggcatggggttgaaaatg |
527 |
Q |
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| T |
16381615 |
tggcagagagagaggggatcaccattgcttggaagtttacaaaggcatggggttgaaaatg |
16381555 |
T |
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