View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_36 (Length: 253)
Name: NF17464_low_36
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 64 - 212
Target Start/End: Complemental strand, 238813 - 238665
Alignment:
| Q |
64 |
aaaatacaattatgtgtcatgtgtttaactttattctacgtaccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtttttgactt |
163 |
Q |
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| T |
238813 |
aaaatacaattatgtgtcatgtgtttaactttatgctacgtaccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtttttgactt |
238714 |
T |
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| Q |
164 |
cagcaacaacaacaacaactacacaaaatattagagggtgcagtgcagg |
212 |
Q |
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| T |
238713 |
cagcaacaacaacaacaactacacaaaatattagagggtgcagtgcagg |
238665 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 224817 - 224766
Alignment:
| Q |
104 |
taccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtt |
155 |
Q |
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| T |
224817 |
tacctagcatgccaaaggcaaatgccaaagtgttgtgactgattgccatgtt |
224766 |
T |
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