View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_4 (Length: 532)
Name: NF17464_low_4
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 15 - 514
Target Start/End: Original strand, 8185103 - 8185602
Alignment:
| Q |
15 |
aatatcaagtatggaaaagaggaagcaacagaaattgaggtaatgaaggcagccaaagctgcaaatgctcatgaattcatcagtacaatggcggaaggat |
114 |
Q |
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| T |
8185103 |
aatatcaagtatggaaaagaggaagcaacagaaattgaggtaatgaaggcagccaaagctgcaaatgctcatgaattcatcagtacaatggcggaaggat |
8185202 |
T |
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| Q |
115 |
acaaaactaaggttggtgagaaaggagtgcagttatcaagaggacaaaaacaaagagtagcgatcgctagagcaattctgaaagatccatccatccttct |
214 |
Q |
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| T |
8185203 |
acaaaactaaggttggtgagaaaggagtgcagttatcaagaggacaaaaacaaagagtagcgatcgctagagcaattctgaaagatccatccatccttct |
8185302 |
T |
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| Q |
215 |
gttggatgaagcaacaaatgcactggacacaatatcagagagacttgtcctagaagctattgataagcttatggaaggtcgaacgatgattttggtagct |
314 |
Q |
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| T |
8185303 |
gttggatgaagcaacaaatgcactggacacaatatcagagagacttgtcctagaagctattgataagcttatggaaggtcgaacgatgattttggtagct |
8185402 |
T |
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| Q |
315 |
cacaggctttcgactgttcgcaatgcagacagcattgcagtgctgcaacatgggaaggttgcagaaatgggaagacatgagaagctgatggctaaaccag |
414 |
Q |
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| T |
8185403 |
cacaggctttcgactgttcgcaatgcagacagcattgcagtgctgcaacatgggaaggttgcagaaatgggaagacatgagaagctgatggctaaaccag |
8185502 |
T |
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| Q |
415 |
gaagcatctataagcaactggttagtctacagcaagaaaagcataaacaagaagagaattagtgtattcatttggagttcgccaagtaaatatagaatta |
514 |
Q |
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| T |
8185503 |
gaagcatctataagcaactggttagtctacagcaagaaaagcataaacaagaagagaattagtgtattcatttggagttcgccaagtaaatatagaatta |
8185602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 49218089 - 49218200
Alignment:
| Q |
144 |
cagttatcaagaggacaaaaacaaagagtagcgatcgctagagcaattctgaaagatccatccatccttctgttggatgaagcaacaaatgcactggaca |
243 |
Q |
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||||||||| |||||||||||||||| ||| | || |||| || ||||| ||| |||||||| | |||||||| ||||| |||||| |||| |||| |
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| T |
49218089 |
cagttatcaggaggacaaaaacaaagggtaacaattgctaaagatattctaaaatatccatccgttgttctgttgcatgaatcaacaattgcaatggatg |
49218188 |
T |
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| Q |
244 |
caatatcagaga |
255 |
Q |
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| T |
49218189 |
caatatcagaga |
49218200 |
T |
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