View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_42 (Length: 244)
Name: NF17464_low_42
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28547040 - 28546813
Alignment:
| Q |
1 |
tctcatcctcatttgaatgaaatcttccttttcacaatttcagacagtaattatacacttcatttgagactaatggatgaagatacatata--ctaagga |
98 |
Q |
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| T |
28547040 |
tctcatcctcattggaatgaaatcttccttttcacaatttcagacagtaattatacacttcatttgagactaatggatgaagatacatatatactaagga |
28546941 |
T |
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| Q |
99 |
tgacttccttggggaggcaatgtgagtaatgaattaaatagaagtatctttatcttcaaaataaagttgtatgatgtgnnnnnnnnnnnnnaaaactttc |
198 |
Q |
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| T |
28546940 |
tgacttccttggggaggcaatgtgagtaatgaattaaatagaagtatctttatcttcaaaataaagttgtatgatgtgttttttattttttaaaactttc |
28546841 |
T |
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| Q |
199 |
actttcaacaattgagtaacctcaatat |
226 |
Q |
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| T |
28546840 |
actttcaacaattgagtaacctcaatat |
28546813 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 1089662 - 1089707
Alignment:
| Q |
65 |
tgagactaatggatgaagatacatatactaaggatgacttccttgg |
110 |
Q |
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| T |
1089662 |
tgaggctaatggatgaagatacatttaccaaggatgacttccttgg |
1089707 |
T |
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