View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_45 (Length: 236)
Name: NF17464_low_45
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33633269 - 33633491
Alignment:
| Q |
1 |
ttcaatggactaacttcttaagtcacgttaaaatatagtaaatatagttaagttgttcattcaaaaatatgagttgctccaacacaatagaacttcttca |
100 |
Q |
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| T |
33633269 |
ttcaatggactaacttcttaagtcacgttaaaatatagtaaatatagttaagttggtcattcaaaaatatgagttgctccaacacaatagaacttcttca |
33633368 |
T |
|
| Q |
101 |
gttaaatcagtcctcacattttagttcaaaattgcagtccacaatcccgattgttgcaactaggttttagcagtatcgcaatggtaacgtaattgtaatt |
200 |
Q |
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| T |
33633369 |
gttaaatcagtcctcacattttagttcaaaattgcagtccacaatcccgattgtttcaactaggttttagcagtatcgcaatggtaacgtaattgtaatt |
33633468 |
T |
|
| Q |
201 |
gcggccaaattgactgttttatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
33633469 |
gcggccaaattgactgttttatt |
33633491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 29192673 - 29192467
Alignment:
| Q |
1 |
ttcaatggactaacttcttaagtcacgttaaaatatagtaaatatagttaagttgttcattcaaaaatatgagttgctccaacacaatagaacttcttca |
100 |
Q |
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|||||||||||||||| | ||||||| ||||||| ||||||||||| ||||| || |||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
29192673 |
ttcaatggactaacttttcaagtcacattaaaatctagtaaatata----agttgatccttcaaaaatatgagttgctcgaacgcaatagaactccttca |
29192578 |
T |
|
| Q |
101 |
gttaaatcagtcctcacattttagttcaaaattgcagtccacaatcccgattgttgcaactaggttttagcagtatcgcaatggtaacgtaattgtaatt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| | ||| ||||| ||||||| |||| |
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| T |
29192577 |
gttaaatcagtcctaacattttagttcaaaattgcagtctacaatcccaattgttgcaactaggttttagaagtccctcaacggtaatgtaattgcaatt |
29192478 |
T |
|
| Q |
201 |
gcggccaaatt |
211 |
Q |
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|||||||||| |
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| T |
29192477 |
acggccaaatt |
29192467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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