View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_49 (Length: 225)
Name: NF17464_low_49
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 8674239 - 8674039
Alignment:
| Q |
9 |
gtagattatactagagattaagtaaatccatagaaaaagattgtccacttccatgagataccaagaaattattaggagtaaaatcccaatttaagaagct |
108 |
Q |
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| T |
8674239 |
gtagattataatagagattaagtaaatccatagaaaaagattgtccacttccatgagataccaagaaattattaggagtaaaatcccaatttaagaagct |
8674140 |
T |
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| Q |
109 |
tgtttgcttgccttaattgagtgaaatg-ggggtaaatcaaaactcggtcaaatggcaagggcgaaaaacatctattaaccccatattattagatgcata |
207 |
Q |
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| T |
8674139 |
tgtttacttgccttaattgagtgaaatgaggggtaaatcaaaactcggtcaaattgcaagggcgaaaaacatctactaaccccatattattagatgcata |
8674040 |
T |
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| Q |
208 |
t |
208 |
Q |
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| T |
8674039 |
t |
8674039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 8688260 - 8688383
Alignment:
| Q |
11 |
agattatactagagattaagtaaatccatagaaaaagattgtccacttccatgagataccaagaaattattaggagtaaaatcccaatttaagaagcttg |
110 |
Q |
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| T |
8688260 |
agattataatagagattaagtaaatccatagaaaa-gattgtccacctctatgagataccaataaattattaggaatgaaatcccagtttaagaaacttg |
8688358 |
T |
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| Q |
111 |
tttgcttgccttaattgagtgaaat |
135 |
Q |
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| T |
8688359 |
tttgcttgccttaatttactgaaat |
8688383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 8692417 - 8692344
Alignment:
| Q |
61 |
atgagataccaagaaattattaggagtaaaatccc-aatttaagaagcttgtttgcttgccttaattgagtgaaatgg |
137 |
Q |
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| T |
8692417 |
atgagatgccaagaaagtattaggagtaaaatcccaaatataagaagcttgt----ttgcgttaattgagtgaaatgg |
8692344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 8688224 - 8688264
Alignment:
| Q |
9 |
gtagattatactagagattaagtaaatccatagaaaaagatt |
50 |
Q |
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| T |
8688224 |
gtagattataatagagattaagtaaatccata-aaaaagatt |
8688264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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