View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_5 (Length: 497)
Name: NF17464_low_5
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 38287024 - 38286559
Alignment:
| Q |
17 |
aatttaaagtaagcaaattgaagtatatgcaaagttatatagttggtagttaactaaacaaataattaagagataggttaaagagggatttgccgactat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38287024 |
aatttaaagtaagcaaattgaagtatatgcaaagttatatagttggtagttaattaaacaaataattaagagataggttaaagagggatttgccgactat |
38286925 |
T |
|
| Q |
117 |
cactgtattgtgatgattattatgtggcaaagaaaagaatcaacgacaatttcaattcattcattaattctatctatctatcaactcaaagcaaattata |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286924 |
cactgtattatgatgattattatgtggcaaagaaaagaatcaacgacaatttcaattcattcattaattctatctatctatcaactcaaagcaaattata |
38286825 |
T |
|
| Q |
217 |
ttgtaatttgtaaagcacacaataataataataaactccagcgactttgactttgccccacgtactccttgtacacacacattgtcccacacacatacat |
316 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286824 |
ttgtaattcgtaaagcacacaataataataataaactccagcgactttgactttgccccacgtactccttgtacacacacattgtcccacacacatacat |
38286725 |
T |
|
| Q |
317 |
acaatatgcctgcttatattatgagatattctcatcagaccgccagggtcacgatagcaaagggttgatcatgatagattggtatttgaaaatgatctca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286724 |
acaatatgcctgcttatattatgagatattctcatcagatcgccagggtcacgatagcaaagggttgatcatgatagattggtatttgaaaatgatctca |
38286625 |
T |
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| Q |
417 |
aatatgaattgtatgattctcctcagtccaatcacacgatatacgatatatagttttcctcctatg |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38286624 |
aatatgaattgtatgattctcctcagtccaatcacacgatatacgatatatagttttcctcgtatg |
38286559 |
T |
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