View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17464_low_50 (Length: 207)

Name: NF17464_low_50
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17464_low_50
NF17464_low_50
[»] chr8 (15 HSPs)
chr8 (16-190)||(6368840-6369014)
chr8 (16-189)||(6389822-6389995)
chr8 (25-177)||(6273400-6273552)
chr8 (25-152)||(6362074-6362201)
chr8 (16-163)||(6409071-6409218)
chr8 (16-163)||(6423097-6423244)
chr8 (41-163)||(6330757-6330879)
chr8 (16-158)||(7457921-7458063)
chr8 (16-158)||(7470323-7470465)
chr8 (43-163)||(6320297-6320417)
chr8 (25-152)||(6287651-6287778)
chr8 (16-153)||(6351180-6351317)
chr8 (67-127)||(6262233-6262293)
chr8 (45-127)||(6456125-6456207)
chr8 (46-125)||(6449659-6449738)
[»] chr5 (1 HSPs)
chr5 (46-127)||(9606276-9606357)
[»] chr2 (2 HSPs)
chr2 (82-127)||(42692174-42692219)
chr2 (77-145)||(42689611-42689679)
[»] chr7 (2 HSPs)
chr7 (77-125)||(46708221-46708269)
chr7 (77-125)||(46709186-46709234)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 6368840 - 6369014
Alignment:
Q  16 cctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368840 cctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaag 6368939  T
Q  116 caatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaatttaacccacttatcagtcttca 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368940 caatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaatttaacccacttatcagtcttca 6369014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 6389822 - 6389995
Alignment:
Q  16 cctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaag 115  Q
    |||||| | |||||||||||| || ||||||||||||||||||  ||||| || || ||| |||||||||||||||||||||||||||||||||||||||    
T  6389822 cctttctcaggcatgaatcttctgcttttagttggtcggttaacaatgtatccaccgtacggatattgtccaaaattaacagctgcatgaagtgctgaag 6389921  T
Q  116 caatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaatttaacccacttatcagtcttc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6389922 caatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaatttaacccacttatcagtcttc 6389995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 6273400 - 6273552
Alignment:
Q  25 ggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccata 124  Q
    ||||| |||||| || ||||||||||||||||||| ||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6273400 ggcattaatcttctgcttttagttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccata 6273499  T
Q  125 tgagggtggtgcaagtttcaatcaactctgtacgagtttccaatttaacccac 177  Q
    ||||||| |||||||  |||||||||||||| ||||||| ||  |||||||||    
T  6273500 tgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccac 6273552  T

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Target: chr8; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 6362074 - 6362201
Alignment:
Q  25 ggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccata 124  Q
    |||||||||||| |  |||||||||||||||||| ||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6362074 ggcatgaatcttctacttttagttggtcggttaacgatatatcctccatacggatattgtccaaaattaactgctgcatgaagtgctgaagcaatccata 6362173  T
Q  125 tgagggtggtgcaagtttcaatcaactc 152  Q
    ||||||||||||||| ||||||||||||    
T  6362174 tgagggtggtgcaagcttcaatcaactc 6362201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 6409071 - 6409218
Alignment:
Q  16 cctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaag 115  Q
    |||||| | |||||||||||| |  ||||||||||||||||||  ||||| || || ||  |||||||||||||||||||||||||||||||||||||||    
T  6409071 cctttctcaggcatgaatcttctacttttagttggtcggttaacaatgtatccaccgtaaggatattgtccaaaattaacagctgcatgaagtgctgaag 6409170  T
Q  116 caatccatatgagggtggtgcaagtttcaatcaactctgtacgagttt 163  Q
    | ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  6409171 ccatccaaatgagggtggtgcaagtttcaatcaactctgcacgagttt 6409218  T

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Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 6423097 - 6423244
Alignment:
Q  16 cctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaag 115  Q
    |||||| | |||||||||||  || | ||||||||||||||||||||||| ||||||||  | |||||||||||||||||||||||||||||||||||||    
T  6423097 cctttctcaggcatgaatctcctgctcttagttggtcggttaaggatgtatcctccatatgggtattgtccaaaattaacagctgcatgaagtgctgaag 6423196  T
Q  116 caatccatatgagggtggtgcaagtttcaatcaactctgtacgagttt 163  Q
    |||||||||| ||| ||||| ||| ||| |||||||| | ||||||||    
T  6423197 caatccatataaggatggtggaagcttcgatcaactccgcacgagttt 6423244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 6330757 - 6330879
Alignment:
Q  41 ttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagt 140  Q
    ||||||||||||||||||| || || ||||||||  ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||     
T  6330757 ttttagttggtcggttaagtatatatcctccatatggatattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagc 6330856  T
Q  141 ttcaatcaactctgtacgagttt 163  Q
    ||||||||||||||||| |||||    
T  6330857 ttcaatcaactctgtacaagttt 6330879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 7457921 - 7458063
Alignment:
Q  16 cctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaag 115  Q
    |||||| | |||||||||||| |  |||| ||||||||||||||||| || |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  7457921 cctttctcaggcatgaatcttctactttttgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaag 7458020  T
Q  116 caatccatatgagggtggtgcaagtttcaatcaactctgtacg 158  Q
    |||||||||||||  ||||||||| |||  ||||||| |||||    
T  7458021 caatccatatgagaatggtgcaagcttctttcaactccgtacg 7458063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 7470323 - 7470465
Alignment:
Q  16 cctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaag 115  Q
    |||||| | |||||||||||| |  |||| ||||||||||||||||| || |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  7470323 cctttctcaggcatgaatcttctactttttgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaag 7470422  T
Q  116 caatccatatgagggtggtgcaagtttcaatcaactctgtacg 158  Q
    |||||||||||||  ||||||||| |||  ||||||| |||||    
T  7470423 caatccatatgagaatggtgcaagcttctttcaactccgtacg 7470465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 6320297 - 6320417
Alignment:
Q  43 ttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagttt 142  Q
    ||||||||||||||||| || || ||||||||  | ||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| ||    
T  6320297 ttagttggtcggttaagtatatatcctccatatgggtattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagctt 6320396  T
Q  143 caatcaactctgtacgagttt 163  Q
    ||||||||||||||| |||||    
T  6320397 caatcaactctgtacaagttt 6320417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 6287651 - 6287778
Alignment:
Q  25 ggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccata 124  Q
    ||||| |||||| || |||| |||||||||||||| ||||| || || ||| |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  6287651 ggcattaatcttctgctttttgttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagccgcatgaagtgccgaagcaatccata 6287750  T
Q  125 tgagggtggtgcaagtttcaatcaactc 152  Q
    ||||| |||||||||  |||||||||||    
T  6287751 tgaggatggtgcaagcctcaatcaactc 6287778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 6351180 - 6351317
Alignment:
Q  16 cctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaag 115  Q
    |||||| | |||||||||||| |  | || ||||| ||||||||||| || ||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  6351180 cctttctcaggcatgaatcttctactctttgttggccggttaaggatatatcctccatatggatattgtccgaaattaacagctgcatgaagtgctgaag 6351279  T
Q  116 caatccatatgagggtggtgcaagtttcaatcaactct 153  Q
    |||||||||| ||| ||||| ||| ||| |||||||||    
T  6351280 caatccatataaggatggtggaagcttcgatcaactct 6351317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 6262233 - 6262293
Alignment:
Q  67 cctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 127  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  6262233 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccatatga 6262293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 6456125 - 6456207
Alignment:
Q  45 agttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 127  Q
    |||||| ||||| ||||| || ||||||||  |||| |||||||| ||||| ||||||||||| ||||||||| |||||||||    
T  6456125 agttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatga 6456207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 6449659 - 6449738
Alignment:
Q  46 gttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 125  Q
    ||||| ||||| ||||| || ||||| ||  |||||||||| |||||||||||||||||||| || |||||| |||||||    
T  6449659 gttggacggttcaggatatatcctccgtaaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatat 6449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 9606357 - 9606276
Alignment:
Q  46 gttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 127  Q
    ||||| ||||| || || || ||||||||  ||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  9606357 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 9606276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 42692174 - 42692219
Alignment:
Q  82 tgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 127  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  42692174 tgtccaaaattaacagctgcatgaagagctgaagcaatccatatga 42692219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 42689679 - 42689611
Alignment:
Q  77 gatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaa 145  Q
    ||||||||||||||||||||||||| || || ||||||||  ||||||||| | | ||||||| |||||    
T  42689679 gatattgtccaaaattaacagctgcgtggagggctgaagccgtccatatgatgatagtgcaagcttcaa 42689611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 46708221 - 46708269
Alignment:
Q  77 gatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 125  Q
    ||||||||||||| || ||||||||||| || |||||||||||||||||    
T  46708221 gatattgtccaaattttacagctgcatgtagggctgaagcaatccatat 46708269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 46709186 - 46709234
Alignment:
Q  77 gatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 125  Q
    ||||||||||||| || ||||||||||| || |||||||||||||||||    
T  46709186 gatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 46709234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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