View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_52 (Length: 201)
Name: NF17464_low_52
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_52 |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 9606492 - 9606304
Alignment:
| Q |
13 |
aatatctcaatcacagaaagatcaattaaggtttgatatttaggtgtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcg |
112 |
Q |
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| T |
9606492 |
aatatctcaatcacagaaagatcaattagggtttgatattttggtgtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcg |
9606393 |
T |
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| Q |
113 |
gagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct |
201 |
Q |
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| T |
9606392 |
gagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct |
9606304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 9590799 - 9590659
Alignment:
| Q |
58 |
gtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcggagttcctttctccgggatccatcttcgactaagtgttggacggt |
157 |
Q |
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| T |
9590799 |
gtaattgttctcaaatatggcttttggggatttttcaccatttcttcatattcaagagttcctttctctggtatccatcttttaccaactattggacggt |
9590700 |
T |
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| Q |
158 |
ttagaatataacctccataaggatattgtccaaaattaacagc |
200 |
Q |
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| T |
9590699 |
ttaggataaaacatc--taaggatattgtccaaagttaacagc |
9590659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 6455991 - 6456175
Alignment:
| Q |
13 |
aatatctcaatcacagaaagatcaattaaggtttgatatttaggtgtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcg |
112 |
Q |
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| T |
6455991 |
aatatctcaatcacagaaagatcaatgagggtctgaaactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcatactccg |
6456090 |
T |
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| Q |
113 |
gagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaac |
197 |
Q |
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| T |
6456091 |
gagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaac |
6456175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 6449524 - 6449712
Alignment:
| Q |
13 |
aatatctcaatcacagaaagatcaattaaggtttgatatttaggtgtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcg |
112 |
Q |
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| T |
6449524 |
aatatctcgatcacagaaagatcaacaagggtttgatactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcgtattccg |
6449623 |
T |
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| Q |
113 |
gagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct |
201 |
Q |
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| T |
6449624 |
gagttcctggctccggaataaatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaaattaacagct |
6449712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 6262205 - 6262265
Alignment:
| Q |
141 |
actaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct |
201 |
Q |
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| T |
6262205 |
actaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagct |
6262265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 6351209 - 6351263
Alignment:
| Q |
147 |
tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct |
201 |
Q |
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| T |
6351209 |
tgttggccggttaaggatatatcctccatatggatattgtccgaaattaacagct |
6351263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 7457950 - 7458004
Alignment:
| Q |
147 |
tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct |
201 |
Q |
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| T |
7457950 |
tgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagct |
7458004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 7470352 - 7470406
Alignment:
| Q |
147 |
tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagct |
201 |
Q |
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| T |
7470352 |
tgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagct |
7470406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 6273421 - 6273474
Alignment:
| Q |
148 |
gttggacggtttagaatataacctccataaggatattgtccaaaattaacagct |
201 |
Q |
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| T |
6273421 |
gttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagct |
6273474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 6287671 - 6287724
Alignment:
| Q |
147 |
tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagc |
200 |
Q |
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| T |
6287671 |
tgttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagc |
6287724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 6330762 - 6330815
Alignment:
| Q |
148 |
gttggacggtttagaatataacctccataaggatattgtccaaaattaacagct |
201 |
Q |
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| T |
6330762 |
gttggtcggttaagtatatatcctccatatggatattgaccaaaattaacagct |
6330815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 42689797 - 42689657
Alignment:
| Q |
61 |
attgttctcaaatatgccttttgagggtttttcaccatctcatcataattcggagttcctttctccgggatccatcttcgactaagtgttggacggttta |
160 |
Q |
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| T |
42689797 |
attgttctcaagtaagccttttgaggactcttcaccatttcatcatattgtgcagttccttcctcaggaagtaatcttctactgatagttgggcggttta |
42689698 |
T |
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| Q |
161 |
gaatataacctccataaggatattgtccaaaattaacagct |
201 |
Q |
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| T |
42689697 |
gaataaaaccgccgtaaggatattgtccaaaattaacagct |
42689657 |
T |
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