View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_8 (Length: 468)
Name: NF17464_low_8
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_8 |
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| [»] scaffold0408 (1 HSPs) |
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Alignment Details
Target: scaffold0408 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 9599 - 9134
Alignment:
| Q |
1 |
gaacaaacaaaagagaggggatgacacgtggtgattttcggttggctggtcaaagtttacacagattctacttttgatggagggctgggattgtgccaaa |
100 |
Q |
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| T |
9599 |
gaacaaacaaaagagaggggatgacacatggtgatttccggttggctagtcaaagtttatacagattctacttttgatggacggttgggattgtgccaaa |
9500 |
T |
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| Q |
101 |
attactagatgcgcatccaatggtggatattggattacatgggtacccagagaaagaaaatcaaacagactctttagggaaaacaattcaaactgtctgg |
200 |
Q |
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| T |
9499 |
attactagatgcgcatccaatggtggatattggattacatgggtacctagagaaagaaaatcaaacagactctttagggaaaagaattcaaactgtctgg |
9400 |
T |
|
| Q |
201 |
aatacatacgataatatcccagcgacgacaatggcgattggaatccggaggttctggaggcggcg------------gtgagcatgtgaaaagtggcgcc |
288 |
Q |
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| T |
9399 |
aatatgtacgataatatcccagcgacgacaatggcgattggaatccgatggttctggaggcggcggtgacaatggcggtgagcatgtgaaaagcagcgtt |
9300 |
T |
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| Q |
289 |
gtaggttgagactgagttttgagagaatttggtggtttcgtcggcgaccgcaaaaatggattgattaacggtggtaccgaatgtgaatataagaatgttt |
388 |
Q |
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| T |
9299 |
gtaggttgagactgagttttgacaaaatttggtggtttcgccggcggccgaaaaaatggattgattaacggtggtaccggatgtgaagataagaatattt |
9200 |
T |
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| Q |
389 |
ccggtggcgtttgtagatctgatggtttaggcggtggctgctgcgtcggaagaggggccacaactg |
454 |
Q |
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| T |
9199 |
ccgatggcgtttgtagatctggtggtttaggtggtggctgctacgtcggaagaggggccacaactg |
9134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 14099257 - 14098792
Alignment:
| Q |
1 |
gaacaaacaaaagagaggggatgacacgtggtgattttcggttggctggtcaaagtttacacagattctacttttgatggagggctgggattgtgccaaa |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||| |
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| T |
14099257 |
gaacaaacaaaagagaggggatgacacatggtgatttccggttggctagtcaaagtttatacagattctacttttgatggacggttgggattgtgccaaa |
14099158 |
T |
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| Q |
101 |
attactagatgcgcatccaatggtggatattggattacatgggtacccagagaaagaaaatcaaacagactctttagggaaaacaattcaaactgtctgg |
200 |
Q |
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| T |
14099157 |
attactagatgcgcatccaatggtggatattggattacatgggtacctagagaaagaaaatcaaacagactctttagggaaaagaattcaaactgtctgg |
14099058 |
T |
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| Q |
201 |
aatacatacgataatatcccagcgacgacaatggcgattggaatccggaggttctggaggcggcg------------gtgagcatgtgaaaagtggcgcc |
288 |
Q |
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| T |
14099057 |
aatatgtacgataatatcccagcgacgacaatggcgattggaatccgatggttctggaggcggcggtgacaatggcggtgagcatgtgaaaagcagcgtt |
14098958 |
T |
|
| Q |
289 |
gtaggttgagactgagttttgagagaatttggtggtttcgtcggcgaccgcaaaaatggattgattaacggtggtaccgaatgtgaatataagaatgttt |
388 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| |||||||| ||| |
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| T |
14098957 |
gtaggttgagactgagttttgacaaaatttggtggtttcgccggcggccgaaaaaatggattgattaacggtggtaccggatgtgaagataagaatattt |
14098858 |
T |
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| Q |
389 |
ccggtggcgtttgtagatctgatggtttaggcggtggctgctgcgtcggaagaggggccacaactg |
454 |
Q |
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| T |
14098857 |
ccgatggcgtttgtagatctggtggtttaggtggtggctgctacgtcggaagaggggccacaactg |
14098792 |
T |
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