View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_low_9 (Length: 457)
Name: NF17464_low_9
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 2333343 - 2332909
Alignment:
| Q |
11 |
cacagagatcgcccgtggtggccatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttctggtaaaaagcaggtggaaaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
2333343 |
cacagagatcgcccgtggtggccatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttccggttaaaagcaggtggaaaag |
2333244 |
T |
|
| Q |
111 |
attaagattttcgcaaacttttctagaaaaatttctttctggcatctgagcaagaccagcaagcttaattaagcttacacattctagaaaagattatggn |
210 |
Q |
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| T |
2333243 |
attaagattttcgcaaacttttctagaaaaaattctttctggcatctgagcaagaccagcaagcttaattaagcttacacattctagaaaagattatggt |
2333144 |
T |
|
| Q |
211 |
nnnnnnccctcataatctgatggaattcaaaggtccgaattattatactcacatttccaaaaggaaaatcaaattgttacacaatgagctctttggcttg |
310 |
Q |
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| T |
2333143 |
ttttttccctcataatttgatggaattcaaaggtccgaattattatactcacatttccaaaaggaaaatcaaattgttacacaatgagctctttggcttg |
2333044 |
T |
|
| Q |
311 |
taaattattgctgcacggtattaagctcattataccaaatattatttatgaatgcctccctcccacacagaacaacaaggctatgttcgtatagatggaa |
410 |
Q |
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| T |
2333043 |
taaattattgctgcacggtattaagctcattataccaaatattatttatgaatgcctccctcccacacagaacaacaaggctatgttcgtatagatggaa |
2332944 |
T |
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| Q |
411 |
aaccaatagaacaaaggcaaagtgatgttataact |
445 |
Q |
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| T |
2332943 |
aaccaatagaacaaaggcaaagtgatgttataact |
2332909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 47778466 - 47778032
Alignment:
| Q |
11 |
cacagagatcgcccgtggtggccatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttctggtaaaaagcaggtggaaaag |
110 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47778466 |
cacagagatcgcccgtggtgggcatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttctggtaaaaagcaggtggaaaag |
47778367 |
T |
|
| Q |
111 |
attaagattttcgcaaacttttctagaaaaatttctttctggcatctgagcaagaccagcaagcttaattaagcttacacattctagaaaagattatggn |
210 |
Q |
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| T |
47778366 |
attaagattttggcaaacttttctagaaaaaattctttctggcatctgagcaagaccagcaagcttaattaagcttacacattctagaaaagattatggt |
47778267 |
T |
|
| Q |
211 |
nnnnnnccctcataatctgatggaattcaaaggtccgaattattatactcacatttccaaaaggaaaatcaaattgttacacaatgagctctttggcttg |
310 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47778266 |
ttttttccctcataatttgatggaattcaaaggtccgaattattatactcacatatccaaaaggaaaatcaaattgttagacaatgagctctttggcttg |
47778167 |
T |
|
| Q |
311 |
taaattattgctgcacggtattaagctcattataccaaatattatttatgaatgcctccctcccacacagaacaacaaggctatgttcgtatagatggaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47778166 |
taaattattgctgcacggtattaagctcattataccaaatattatttatgattgcctccctccctcacagaacaacaaggctatgttcgtatagatggaa |
47778067 |
T |
|
| Q |
411 |
aaccaatagaacaaaggcaaagtgatgttataact |
445 |
Q |
| |
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||||||||||||||||||||| ||||||| ||||| |
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|
| T |
47778066 |
aaccaatagaacaaaggcaaaatgatgttctaact |
47778032 |
T |
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