View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17465_high_1 (Length: 461)

Name: NF17465_high_1
Description: NF17465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17465_high_1
NF17465_high_1
[»] chr1 (26 HSPs)
chr1 (16-442)||(8640297-8640724)
chr1 (359-426)||(35203179-35203246)
chr1 (359-424)||(45526202-45526267)
chr1 (21-228)||(35254137-35254344)
chr1 (359-424)||(35476995-35477060)
chr1 (363-424)||(35222789-35222850)
chr1 (359-424)||(35295194-35295259)
chr1 (371-423)||(35265360-35265412)
chr1 (359-423)||(35272922-35272986)
chr1 (363-426)||(35192839-35192902)
chr1 (371-426)||(35216970-35217025)
chr1 (371-424)||(35206425-35206478)
chr1 (359-424)||(35213583-35213648)
chr1 (359-424)||(45534406-45534471)
chr1 (23-138)||(45527116-45527231)
chr1 (24-136)||(35249925-35250037)
chr1 (369-423)||(35228446-35228500)
chr1 (23-136)||(35203543-35203656)
chr1 (20-127)||(35477282-35477389)
chr1 (16-130)||(35223111-35223225)
chr1 (359-424)||(35145228-35145293)
chr1 (388-424)||(19267391-19267427)
chr1 (23-130)||(35193198-35193305)
chr1 (359-406)||(35253954-35254001)
chr1 (37-136)||(35265665-35265764)
chr1 (187-263)||(35265547-35265623)
[»] chr2 (1 HSPs)
chr2 (359-424)||(33137641-33137706)
[»] chr3 (5 HSPs)
chr3 (359-424)||(17663862-17663927)
chr3 (359-424)||(19246363-19246428)
chr3 (24-250)||(898483-898709)
chr3 (362-424)||(898925-898987)
chr3 (369-417)||(53921123-53921171)
[»] chr7 (2 HSPs)
chr7 (380-424)||(38635327-38635371)
chr7 (380-424)||(38633580-38633624)


Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 8640724 - 8640297
Alignment:
Q  16 tgggagcgtttgaagaattggcggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcagactctctcttgtctccaagacttt 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8640724 tgggagcctttgaagaattggcggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcaggctctctcttgtctccaagacttt 8640625  T
Q  116 ccgttctgccgccgactccgatgaaatctgggatcgttttctccgttctgatcccctactcatagccgatatcatctcacagtttcctccccttgccaac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8640624 ccgttctgccgccgactccgatgaaatctgggatcgttttctccgttctgatcccctactcatagccgatatcatctcacagtttccttcccttgccaac 8640525  T
Q  216 gctcccaccaaaagagcattctatctcgccctctctaatcatcctatcctcactcgtgatggtcgaatggtatattattgtattcttctttcttccaatt 315  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8640524 gctcccaccaaaagagcattctatctagccctctctaatcatcctatcctcactcgtgatggtcgaatggtatattattgtattcttctttcttccaatt 8640425  T
Q  316 tctctccattgaaatgttta-tattaatgctcttcgatttatttatgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgc 414  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8640424 tctctccattgaaatgtttattattaatgctcttcgatttatttatgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgc 8640325  T
Q  415 tagatctctctcttttggttgggctggc 442  Q
    ||||||||||||||||||||||||||||    
T  8640324 tagatctctctcttttggttgggctggc 8640297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 35203246 - 35203179
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 426  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35203246 atgcagagcattcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 35203179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 45526267 - 45526202
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45526267 atgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 45526202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 35254344 - 35254137
Alignment:
Q  21 gcgtttgaagaattggcggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcagactctctcttgtctccaagactttccgtt 120  Q
    |||||||| |||||| |||||| |||  |||||||  |||||| |||||| |||||| |||||| || ||| |||||||| |||||||| ||||||||||    
T  35254344 gcgtttgaggaattgccggaagaatgtgttgccgcgatactctctcgtaccactccttttgacgccgtcaggctctctctcgtctccaaaactttccgtt 35254245  T
Q  121 ctgccgccgactccgatgaaatctgggatcgttttctccgttctgatcccctactcatagccgatatcatctcacagtttcctccccttgccaacgctcc 220  Q
    |||||||| | ||||| ||| | ||| |||  ||||||| ||| ||| ||| | |||| | |  | ||||||| || |||||| |||||||||| ||| |    
T  35254244 ctgccgccaattccgacgaagtatggaatcaatttctcccttccgattcccaattcatcgacactgtcatctcccaatttccttcccttgccaatgcttc 35254145  T
Q  221 caccaaaa 228  Q
    ||||||||    
T  35254144 caccaaaa 35254137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 35477060 - 35476995
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  35477060 atgcagagccttcaattggatagaaagagtgggaaaaagtgttacatgcttgctgctagatctctc 35476995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 35222850 - 35222789
Alignment:
Q  363 agagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    |||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  35222850 agagcgttcaattggatagaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctc 35222789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 35295194 - 35295259
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  35295194 atgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctc 35295259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 35265412 - 35265360
Alignment:
Q  371 caattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 423  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35265412 caattggacagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35265360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 35272986 - 35272922
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 423  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  35272986 atgcagagcattcaattagagagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35272922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 35192902 - 35192839
Alignment:
Q  363 agagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 426  Q
    ||||| |||||||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  35192902 agagctttcaattggataggaagagtggaaaaaagtgttatatgcttgctgctagatctctctc 35192839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 426
Target Start/End: Complemental strand, 35217025 - 35216970
Alignment:
Q  371 caattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 426  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  35217025 caattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctctc 35216970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 35206478 - 35206425
Alignment:
Q  371 caattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  35206478 caattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35206425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 35213648 - 35213583
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    ||||||||| |||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  35213648 atgcagagctttcaattggagagaaaaagtggaaaaaaatgttatatgcttgctgctagatctctc 35213583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 45534471 - 45534406
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    ||||||||| ||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||    
T  45534471 atgcagagctttcaattagatagaaatagtgggaaaaagtgttacatgcttgctgctagatctctc 45534406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 45527231 - 45527116
Alignment:
Q  23 gtttgaagaattggcggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcagactctctcttgtctccaagactttccgttct 122  Q
    ||||||||| || || ||||| |||||| || || |||| |  ||||||||||||||||||| ||||||||||||  | || || |||||||||| ||||    
T  45527231 gtttgaagatttagcagaaggttgcatttcctccatactgtcacgtacgactcctgttgacgccggcagactctccgtcgtttcgaagactttcctttct 45527132  T
Q  123 gccgccgactccgatg 138  Q
    |||||||| |||||||    
T  45527131 gccgccgattccgatg 45527116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 35250037 - 35249925
Alignment:
Q  24 tttgaagaattggcggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcagactctctcttgtctccaagactttccgttctg 123  Q
    ||||| |||||| ||||||  |||||||||||| |||||| ||| |||||||| ||||||| || ||||||||| || || || |||||  |||||||||    
T  35250037 tttgatgaattgccggaagagtgcattgccgccatactctctcgaacgactcccgttgacgccgtcagactctccctcgtttctaagacactccgttctg 35249938  T
Q  124 ccgccgactccga 136  Q
    |||| || |||||    
T  35249937 ccgctgattccga 35249925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 35228500 - 35228446
Alignment:
Q  369 ttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 423  Q
    |||||||||| |||||||||||||| |||||||| |||||| |||||||||||||    
T  35228500 ttcaattggagagaaagagtggaaagaagtgttatatgctttctgctagatctct 35228446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 35203656 - 35203543
Alignment:
Q  23 gtttgaagaattggcggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcagactctctcttgtctccaagactttccgttct 122  Q
    |||||| |||||| |||||||||||||| ||||| | |||| ||| || ||||| | ||||| ||||||||||||  |||| ||||||||  | | ||||    
T  35203656 gtttgaggaattgccggaaggatgcatttccgccattctctctcgcacaactccggctgacgccggcagactctccgttgtttccaagacaattctttct 35203557  T
Q  123 gccgccgactccga 136  Q
    |||||||| |||||    
T  35203556 gccgccgattccga 35203543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 35477389 - 35477282
Alignment:
Q  20 agcgtttgaagaattggcggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcagactctctcttgtctccaagactttccgt 119  Q
    |||||||||||||||  ||||||| |||||||||||| |||| | | |||| ||||| | ||||| ||||||| ||||  | || |||||||| ||||||    
T  35477389 agcgtttgaagaattaccggaagggtgcattgccgccatactatcttgtaccactccagctgacgccggcagattctccgtcgtttccaagacattccgt 35477290  T
Q  120 tctgccgc 127  Q
    | ||||||    
T  35477289 tgtgccgc 35477282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 35223225 - 35223111
Alignment:
Q  16 tgggagcgtttgaagaattggcggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcagactctctcttgtctccaagacttt 115  Q
    |||||||||||||||| ||  ||||||| ||||| |||||||| |||| || ||| ||||| | ||||| |||||||||| |  | || || || |||||    
T  35223225 tgggagcgtttgaagagttaccggaagggtgcatcgccgccgtgctctctcttacaactccggctgacgccggcagactcgccgtcgtttcaaaaacttt 35223126  T
Q  116 ccgttctgccgccga 130  Q
    |||||| ||||||||    
T  35223125 ccgttccgccgccga 35223111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 35145293 - 35145228
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    ||||| ||| |||||||| | ||| ||||| ||||||||||||||||| || ||||||||||||||    
T  35145293 atgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctc 35145228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 19267391 - 19267427
Alignment:
Q  388 tggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    |||||||||||||||||| ||||||||||||||||||    
T  19267391 tggaaaaaagtgttacattcttgctgctagatctctc 19267427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 35193305 - 35193198
Alignment:
Q  23 gtttgaagaattggcggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcagactctctcttgtctccaagactttccgttct 122  Q
    |||||| |||||  |||||||||||||| ||||| || ||| ||| || ||||| | ||| | ||||||||||||  |||| |||||||||||||  |||    
T  35193305 gtttgaggaattatcggaaggatgcatttccgccataatctctcgcacaactccggctgatgccggcagactctccgttgtttccaagactttcctatct 35193206  T
Q  123 gccgccga 130  Q
    || |||||    
T  35193205 gcagccga 35193198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 35254001 - 35253954
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatg 406  Q
    ||||||||  |||||||||| ||||||||||||||||| |||||||||    
T  35254001 atgcagagttttcaattggatagaaagagtggaaaaaattgttacatg 35253954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 35265764 - 35265665
Alignment:
Q  37 cggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcagactctctcttgtctccaagactttccgttctgccgccgactccga 136  Q
    ||||||| ||||||||| || || ||| |||||| ||||| ||||||| ||||||||||||  | || || ||||||||||| || ||| |||| |||||    
T  35265764 cggaaggttgcattgccaccatagtctctcgtacaactccagttgacgccggcagactctccgtcgtttcaaagactttccgatcagcctccgattccga 35265665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 35265623 - 35265547
Alignment:
Q  187 tcatctcacagtttcctccccttgccaacgctcccaccaaaagagcattctatctcgccctctctaatcatcctatc 263  Q
    |||||||||| | |||| | |||||||||||||| ||||||| |||  | |||||||| |||||| ||| |||||||    
T  35265623 tcatctcacactctccttcacttgccaacgctcctaccaaaaaagctctgtatctcgctctctctgatcgtcctatc 35265547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 33137641 - 33137706
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  33137641 atgcagagctttcaattgcacagaaagagtggacaaaagtgttacatgcttgctgctagatctctc 33137706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 17663862 - 17663927
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    ||||||||| |||||||| | |||||||||||| | ||||||||| ||||||||||||||||||||    
T  17663862 atgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctc 17663927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 19246363 - 19246428
Alignment:
Q  359 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    ||||||||| |||||||| | |||||||||||| | ||||||||| ||||||||||||||||||||    
T  19246363 atgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctc 19246428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 898483 - 898709
Alignment:
Q  24 tttgaagaattggcggaaggatgcattgccgccgtactctgtcgtacgactcctgttgacgtcggcagactctctcttgtctccaagactttccgttctg 123  Q
    ||||| |||||  |||||||||||||  | ||| | || | |||||||||||||||||| ||  |||||||||| ||||| ||||||||||||| || ||    
T  898483 tttgatgaatttccggaaggatgcatctcagccattctgtctcgtacgactcctgttgatgtttgcagactctcccttgtttccaagactttcctttatg 898582  T
Q  124 ccgccgactccgatgaaatctgggatcgttttctccgttctgatcccctactcatagccgatatcatctcacagtttcctccccttgccaacgctcccac 223  Q
    |||| || ||||| |   | ||| | |  ||||||| ||  ||| |||  |||||   |  |||||||||||| | |||| |||||||||||||||||||    
T  898583 ccgctgattccgacgctgtttggaaccactttctccctttggattcccgtctcattaactctatcatctcacattctccttcccttgccaacgctcccac 898682  T
Q  224 caaaagagcattctatctcgccctctc 250  Q
    |||||  ||  |||||||||| |||||    
T  898683 caaaaaggccctctatctcgctctctc 898709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 424
Target Start/End: Original strand, 898925 - 898987
Alignment:
Q  362 cagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    |||||| || ||||||| || || ||||||||||  ||||||||||||||||| |||||||||    
T  898925 cagagctttaaattggataggaaaagtggaaaaatatgttacatgcttgctgccagatctctc 898987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 53921123 - 53921171
Alignment:
Q  369 ttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctag 417  Q
    |||||||||| ||||||||||| ||||| |||| ||||||| |||||||    
T  53921123 ttcaattggatagaaagagtgggaaaaaatgttgcatgctttctgctag 53921171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 38635371 - 38635327
Alignment:
Q  380 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    |||||||||||||||||||||||||| |||||||||| |||||||    
T  38635371 agaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 38635327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 38633624 - 38633580
Alignment:
Q  380 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 424  Q
    |||||||||||||||||||||| ||| |||||||||| |||||||    
T  38633624 agaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 38633580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University