View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17465_high_3 (Length: 411)
Name: NF17465_high_3
Description: NF17465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17465_high_3 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 30292261 - 30292662
Alignment:
| Q |
1 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30292261 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaacgttttaatgctt |
30292360 |
T |
|
| Q |
101 |
attatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatga |
200 |
Q |
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| T |
30292361 |
attatgcttgtatgctctaag---------ctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccactttcctactatga |
30292451 |
T |
|
| Q |
201 |
ataaattaatcaagaacaagttttgtgccacctcctctctgctactatgagtatgaacgaacgatatttttccctacagaatgagtaagaataacttaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
30292452 |
ataaattaatcaagaacaagttttgtgccacctcctctctgctactatgagtatgaacgaaagatatttttccctacagaatgagtaagaatgacttaat |
30292551 |
T |
|
| Q |
301 |
caagtctaaatggtggatatatgtccttaaactatatttcttttaaggcacccataaaattttataatattttgtgttatgtgaagtaatttactacagt |
400 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
30292552 |
caagtataaatggtggatatatgtccttaaactatatttcttttaagacacccataaaattttataatattttgtgttatgtaaagtaatttactaaagt |
30292651 |
T |
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| Q |
401 |
tatgaaattct |
411 |
Q |
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| T |
30292652 |
tatgaaattct |
30292662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 30315761 - 30316003
Alignment:
| Q |
1 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--- |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
30315761 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagt |
30315860 |
T |
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| Q |
98 |
-----cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacc-ttt |
191 |
Q |
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| T |
30315861 |
gatcaaatgttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacggcattatcttgtaattgtaactagagttccacctttt |
30315960 |
T |
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| Q |
192 |
ctactatgaataaattaatcaagaacaagttttgtgccacctc |
234 |
Q |
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| T |
30315961 |
gtactatgaataaattaatcaagaataagttttgtgccacctc |
30316003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 30304895 - 30305136
Alignment:
| Q |
1 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--- |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
30304895 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagt |
30304994 |
T |
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| Q |
98 |
-----cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttc |
192 |
Q |
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|||||||| || | | || | |||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30304995 |
gatcaaatattatgcaagtatgatatatggagctatagctaataatgagcgatgaataaaacggcattatcttgtaactataactagagttccacctttc |
30305094 |
T |
|
| Q |
193 |
tactatgaataaattaatcaagaacaagttttgtgccacctc |
234 |
Q |
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|||||||||||| | ||||||||| |||||||| |||||||| |
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| T |
30305095 |
tactatgaataactgaatcaagaataagttttgagccacctc |
30305136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 30287227 - 30287474
Alignment:
| Q |
1 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--- |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
30287227 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagt |
30287326 |
T |
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| Q |
98 |
-----cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttc |
192 |
Q |
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| T |
30287327 |
gatcaaatgttatgcatgtatgctgtaaggaactatagctcataatgagaaaagaataaaacggcattatcttg------taactagagttcctcctttc |
30287420 |
T |
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| Q |
193 |
tactatgaataaattaatcaagaacaagttttgtgccacctcctctctgctact |
246 |
Q |
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| T |
30287421 |
tactatgaataaattaatcaagaataagttttgtgcctcctcctctctgctact |
30287474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 30300103 - 30300338
Alignment:
| Q |
1 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--- |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||| |||||||| |
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| T |
30300103 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcttatatcttcaattttgggagtattttaatgagt |
30300202 |
T |
|
| Q |
98 |
-----cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttc |
192 |
Q |
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|||||||||||| ||| |||| || ||||||||||||||||| ||||||||||||| || |||| || ||||||||||||||||| |
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| T |
30300203 |
gatcaaatattatgcttgtatgctgtaaggagtcatagctcatagtgagcagagaataaaacggcaatatcttg------tatctagagttccacctttc |
30300296 |
T |
|
| Q |
193 |
tactatgaataaattaatcaagaacaagttttgtgccacctc |
234 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||| |
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| T |
30300297 |
caccatgaataaattaatcaagaataagttttgtgccacctc |
30300338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 30287513 - 30287591
Alignment:
| Q |
259 |
gaacgatatttttccctacagaatgagtaagaataacttaatcaagtctaaatggtggatatatgtccttaaactatattt |
339 |
Q |
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|||| |||||||||||||| ||| |||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
30287513 |
gaacaatatttttccctactgaaagagt--gaataacttaatcaagcataaatggaggatatatgtccttaaagtatattt |
30287591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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