View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17465_high_8 (Length: 263)
Name: NF17465_high_8
Description: NF17465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17465_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 31764287 - 31764506
Alignment:
| Q |
8 |
agagaaattcacctttggttgtcttcaacaaattataattattagcttcaacataaatttctcccaaatcacccacccatcgtacaccactcttcaaaga |
107 |
Q |
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| T |
31764287 |
agagaaattcacctttggttgtcttcaacaaattataattattagcttcaacataaatttctctcaaatcacccacccatcgtacaccactcttcaaaga |
31764386 |
T |
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| Q |
108 |
aaatatataacatacacctcacaacactctaaacctcaagtatagagaaataaaagagtctaatacaagcttaaaatatttcatgcatattgaaacgaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31764387 |
aaatatataacatacacctcacaacactctaaacctcaagtatagagaaataaaagagtctaatacaagcttaaaatatttcatgcatattgaaacgaag |
31764486 |
T |
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| Q |
208 |
agcttaagctatatatagcc |
227 |
Q |
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|||||||||||||||||||| |
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| T |
31764487 |
agcttaagctatatatagcc |
31764506 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 17645626 - 17645666
Alignment:
| Q |
99 |
cttcaaagaaaatatataacatacacctcacaacactctaa |
139 |
Q |
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| T |
17645626 |
cttcaaagaaaatacataacttacatctcacaacactctaa |
17645666 |
T |
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