View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17465_low_12 (Length: 218)
Name: NF17465_low_12
Description: NF17465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17465_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 1856872 - 1856700
Alignment:
| Q |
29 |
aacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttaga |
128 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1856872 |
aacaccctaagagtttgaccacatttctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttaga |
1856773 |
T |
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| Q |
129 |
ctttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1856772 |
ctttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg |
1856700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 1816172 - 1816344
Alignment:
| Q |
29 |
aacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttaga |
128 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |
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| T |
1816172 |
aacaccccaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcgttaatgaattgttcaatttggctttcgtctattgttttgga |
1816271 |
T |
|
| Q |
129 |
ctttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg |
201 |
Q |
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| T |
1816272 |
ctttttgatagccacaattctattatcatcaagttcccctttgaaaactgtaccaaaacctcctctacctatg |
1816344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 1868467 - 1868302
Alignment:
| Q |
29 |
aacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttaga |
128 |
Q |
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||||||| ||||||||||| |||||||| |||||||||||||||| |||| ||||||||||||||||||| || ||||||||| | |||||| |||| || |
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| T |
1868467 |
aacaccccaagagtttgacaacattcctatgatttatttgagagagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttga |
1868368 |
T |
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| Q |
129 |
ctttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctccttt |
194 |
Q |
| |
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|||||||||||||| ||||| |||||||| || |||||| |||| ||||||||||| ||||| |
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| T |
1868367 |
ttttttgatagcaacgattcttttatcatctagaagtcctttgaaaacggtaccaaaaccaccttt |
1868302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 1842858 - 1842693
Alignment:
| Q |
29 |
aacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttaga |
128 |
Q |
| |
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||||||| ||||||||||| |||||||| |||||||||||||||| || | ||||||||||||||||| | ||||||||| | |||||| |||| || |
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| T |
1842858 |
aacaccccaagagtttgacaacattcctatgatttatttgagagagaataattacctcattaatgaattgattgatttggcttctatctattatttttga |
1842759 |
T |
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| Q |
129 |
ctttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctccttt |
194 |
Q |
| |
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|||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||| ||||| |
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| T |
1842758 |
ttttttgatagcaacgattcttttatcatctagaaatcctttgtaaacagtaccaaaaccaccttt |
1842693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 9200390 - 9200558
Alignment:
| Q |
29 |
aacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttaga |
128 |
Q |
| |
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|||| |||| ||||||||| |||||||| ||||||||||| | | |||| | ||||||||||||||||| |||||||| || ||| ||| |||| || |
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| T |
9200390 |
aacagcctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttgga |
9200489 |
T |
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| Q |
129 |
ctttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacc |
197 |
Q |
| |
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||||| | ||| |||||| | |||||| | | ||||||||||||||||||||||||||| |||| |
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| T |
9200490 |
tttttttacagcgacaattttgttatcaggtaaaactcctttgtaaactgtaccaaaacctcctctacc |
9200558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 9118455 - 9118329
Alignment:
| Q |
29 |
aacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttaga |
128 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||||||||| || | || | | ||||||||||||||||| || ||||| || ||||||| || | || |
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| T |
9118455 |
aacaccctaaaagtttgacaacattcctatgatttatttgggacagaataactacctcattaatgaattgctcgatttgatttgcgtctattattctgga |
9118356 |
T |
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| Q |
129 |
ctttttgatagcaacaattctattatc |
155 |
Q |
| |
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|||||||| ||| || ||||| ||||| |
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| T |
9118355 |
ctttttgacagccacgattctgttatc |
9118329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 9170823 - 9170901
Alignment:
| Q |
29 |
aacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttg |
107 |
Q |
| |
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||||||||| ||||||||| |||||||| ||||||||||| | | |||| | ||||||||||||||||| |||||||| |
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| T |
9170823 |
aacaccctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattgctcaatttg |
9170901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 9218906 - 9219024
Alignment:
| Q |
29 |
aacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttaga |
128 |
Q |
| |
|
|||||||||| |||||||| || ||||| ||||||||||| || | |||| | ||||||||||||||||| || || || || ||||||| |||| || |
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| T |
9218906 |
aacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaactacctcattaatgaattgctcgatctgatttgcgtctattattttgga |
9219005 |
T |
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| Q |
129 |
ctttttgatagcaacaatt |
147 |
Q |
| |
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|||||||| ||| |||||| |
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| T |
9219006 |
ctttttgacagcgacaatt |
9219024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 9229799 - 9229860
Alignment:
| Q |
37 |
aagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattg |
98 |
Q |
| |
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||||||||||| ||||| || ||||||||||| || | |||| |||||||||| |||||||| |
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| T |
9229799 |
aagagtttgacaacatttctatgatttatttgggacaaaacaaccacctcatttatgaattg |
9229860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 37567809 - 37567642
Alignment:
| Q |
34 |
cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttt |
133 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| || |||| |
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| T |
37567809 |
cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt |
37567710 |
T |
|
| Q |
134 |
tgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg |
201 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||| |||||||| |
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|
| T |
37567709 |
tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatg |
37567642 |
T |
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