View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17465_low_2 (Length: 425)
Name: NF17465_low_2
Description: NF17465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17465_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 1323919 - 1323527
Alignment:
| Q |
17 |
tctctttcttgaagtgaaggaaaccagttttgatcctctctgaggcttgatcagatgttggaacaccatcagctgatgctgttgttcctagctgagctgt |
116 |
Q |
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| T |
1323919 |
tctctttcttgaagtgaaggaaaccagttttgatcctctctgaggcttgatcagatgttggaacaccatcagctgatgctgttgttcctagctgagctgt |
1323820 |
T |
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| Q |
117 |
aatttgcgcaaccttttcagctgctgtggctttcaattcagtcttctccctatatttgaaagattataagataagataagatattgcgtatatgagactt |
216 |
Q |
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| T |
1323819 |
aatttgctcaaccttttcagctgctgtggctttcaattcagtcttctccctatatttgaaagattataagataagataagatattgcgtatatgagattt |
1323720 |
T |
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| Q |
217 |
tagaaataattattgttaaagttaggttattttaatgatttgacaattatgaacgactgacggtgtaaaaaatatttacgttaacgatgaatgaattaat |
316 |
Q |
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| T |
1323719 |
tagaaataattatcgttgaagttaggttattttaatgatctgataattatgaacgattgacggtgtaaaaaata-----------gatgaatgaattaat |
1323631 |
T |
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| Q |
317 |
attgtttatataattctaataggagaaggtgtttgagatttacctcaacaatttttggagttcttcaatagcttcatcatagccctttcccatttcttct |
416 |
Q |
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| T |
1323630 |
attgtgtatataattctaataggagaagttgtttgagatttacctcaacaatttttggagttcttcaatagcttcatcatagccctttcccatttcttct |
1323531 |
T |
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