View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17465_low_4 (Length: 404)

Name: NF17465_low_4
Description: NF17465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17465_low_4
NF17465_low_4
[»] chr5 (11 HSPs)
chr5 (14-387)||(1744757-1745124)
chr5 (14-387)||(1739414-1739784)
chr5 (167-387)||(1725212-1725429)
chr5 (77-231)||(1744649-1744803)
chr5 (77-240)||(1739306-1739469)
chr5 (77-217)||(1724717-1724857)
chr5 (79-227)||(1724857-1725005)
chr5 (190-335)||(1715552-1715700)
chr5 (89-200)||(1760559-1760670)
chr5 (15-61)||(1715658-1715704)
chr5 (258-326)||(1760718-1760786)
[»] chr3 (6 HSPs)
chr3 (77-297)||(3167534-3167739)
chr3 (81-297)||(2023090-2023306)
chr3 (196-342)||(3156507-3156653)
chr3 (196-297)||(3138820-3138921)
chr3 (25-62)||(3156616-3156653)
chr3 (25-62)||(3167638-3167675)
[»] chr7 (5 HSPs)
chr7 (190-320)||(7490802-7490926)
chr7 (170-231)||(9011746-9011807)
chr7 (90-153)||(7484206-7484269)
chr7 (14-60)||(9011746-9011792)
chr7 (17-62)||(7490883-7490928)
[»] chr8 (1 HSPs)
chr8 (196-297)||(23852503-23852607)


Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 1744757 - 1745124
Alignment:
Q  14 aattctaggatttggtggtgcaattacttcaaggattgaagatggtacacatagcagaattagtggccctttagggtatggtaatggtgctttatgtttg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||    
T  1744757 aattctaggatttggtggtgcaattacttcaaggattgaagatggtacacatagcagaattagtggccctt------atggtaatggtgctttatgtttg 1744850  T
Q  114 aaagatatatcaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagtgggactggaattttaggatttggtggtgcaactgctt 213  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1744851 aaagatatattaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagtgggactggaattttaggatttggtggtgcaactgctt 1744950  T
Q  214 caaggattgaagatggtatgaataacaagattggtgctattactaaatttggagattcttctacaaatgttgccacaagttcaagcacaatcataaacaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1744951 caaggattgaagatggtatgaataacaagattggtgctattactaaatttggagattcttctacaaatgttgccacaagttcaagcacaatcataaacaa 1745050  T
Q  314 taaaaatagtgtggatcctactactaccagcaaggatgatattgatttgtcgaagttcaacgcagaagaagaat 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1745051 taaaaatagtgtggatcctactactaccagcaaggatgatattgatttgtcgaagttcaacgcagaagaagaat 1745124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 1739414 - 1739784
Alignment:
Q  14 aattctaggatttggtggtgcaattacttcaaggattgaagatggtacacatagcagaattagtggccctttagggtatggtaatggtgctttatgtttg 113  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||||||||||||    
T  1739414 aattctaggatttggtggttcaactacttcaaggattgaagatggtacaaataacagaattaggggccatttagggtatggtaatggtgctttatgtttg 1739513  T
Q  114 aaagatatatcaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagtgggactggaattttaggatttggtggtgcaactgctt 213  Q
    |||||||||| ||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  1739514 aaagatatattaaacccttcgcttgttagtttgagaaatatggagggtagcaatagtaatagtggggctggaattctaggatttggtggtgcaactgctt 1739613  T
Q  214 caaggattgaagatggtatgaataacaagattggtgctattactaaatttggagattcttctacaaatgttgccacaagttcaagcacaatcataaacaa 313  Q
    | |||||||||||||||| |||| ||||||||||||||||||  |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1739614 cgaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttcaagtacaatcataaacaa 1739713  T
Q  314 taaaaatagtgtggatcctactactaccagcaaggatgatattgatttgtcgaagttcaacgcagaagaagaat 387  Q
    ||||||||||| ||||| |||||||||   ||||||| |||||||| |||| ||||| ||| | ||||||||||    
T  1739714 taaaaatagtgaggatcatactactac---caaggataatattgatctgtctaagtttaactcggaagaagaat 1739784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 167 - 387
Target Start/End: Original strand, 1725212 - 1725429
Alignment:
Q  167 tagtaatagtgggactggaattttaggatttggtggtgcaactgcttcaaggattgaagatggtatgaataacaagattggtgctattactaaatttgga 266  Q
    |||| ||| |||| |||||||| ||||  ||||||||| |||| ||||||||||||||||||  |  ||||| || ||||||||||||  |||||  |||    
T  1725212 tagttataatggggctggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatgggga 1725311  T
Q  267 gattcttctacaaatgttgccacaagttcaagcacaatcataaacaataaaaatagtgtggatcctactactaccagcaaggatgatattgatttgtcga 366  Q
    |||||||||| | ||||||| |||||||||| | |||||||||| |||||||||| ||||||   | ||||||||| |||||||||||||||| ||||||    
T  1725312 gattcttctaaacatgttgctacaagttcaaacgcaatcataaaaaataaaaatattgtgga---tgctactaccaccaaggatgatattgatatgtcga 1725408  T
Q  367 agttcaacgcagaagaagaat 387  Q
    ||||||| || ||||||||||    
T  1725409 agttcaaagctgaagaagaat 1725429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 1744649 - 1744803
Alignment:
Q  77 tggccctttagggtatggtaatggtgctttatgtttgaaagatatatcaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagt 176  Q
    ||||||||| | |||| ||||||||| |||   ||| |||||||||| ||| ||||| ||| ||||||||||||| | | || |||| ||||||||| ||    
T  1744649 tggcccttttgagtatagtaatggtgattttcatttaaaagatatattaaatccttctcttattagtttgagaaacatggagagtagtaatagtaatcgt 1744748  T
Q  177 gggactggaattttaggatttggtggtgcaactgcttcaaggattgaagatggta 231  Q
    |||   |||||| |||||||||||||||||| | |||||||||||||||||||||    
T  1744749 ggggtaggaattctaggatttggtggtgcaattacttcaaggattgaagatggta 1744803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 77 - 240
Target Start/End: Original strand, 1739306 - 1739469
Alignment:
Q  77 tggccctttagggtatggtaatggtgctttatgtttgaaagatatatcaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagt 176  Q
    ||||||||| | |||| ||||||||| |||   |||||||||||||| ||| ||||| ||| || |||||||||| | | || |||| ||||||||  ||    
T  1739306 tggcccttttgagtatagtaatggtgatttgcatttgaaagatatattaaatccttctcttgttggtttgagaaacatggagagtagtaatagtaaccgt 1739405  T
Q  177 gggactggaattttaggatttggtggtgcaactgcttcaaggattgaagatggtatgaataaca 240  Q
    |||   |||||| |||||||||||||| ||||| |||||||||||||||||||||  |||||||    
T  1739406 ggggtgggaattctaggatttggtggttcaactacttcaaggattgaagatggtacaaataaca 1739469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 1724717 - 1724857
Alignment:
Q  77 tggccctttagggtatggtaatggtgctttatgtttgaaagatatatcaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagt 176  Q
    ||||||||| ||||||  ||||||||||||  ||||| |||| || | ||||||||| ||| ||||||||||||||| | ||||||| |||| |||||||    
T  1724717 tggcccttttgggtataataatggtgctttgggtttgcaagagatgttaaacccttctcttgttagtttgagaaatatggagggtagtaataataatagt 1724816  T
Q  177 gggactggaattttaggatttggtggtgcaactgcttcaag 217  Q
    ||   ||| ||| ||||  ||||||||| |||| |||||||    
T  1724817 ggagttgggattctaggtattggtggtggaactacttcaag 1724857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 1724857 - 1725005
Alignment:
Q  79 gccctttagggtatggtaatggtgctttatgtttgaaagatatatcaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagtgg 178  Q
    ||||||| |||||| |||||||| ||||  ||||| |||| || | |||||||||  || ||||||||| ||||| | ||||||| ||||||| ||||||    
T  1724857 gcccttttgggtatagtaatggtactttgggtttgcaagagatgttaaacccttcttttgttagtttgaaaaatatggagggtagtaatagtactagtgg 1724956  T
Q  179 gactggaattttaggatttggtggtgcaactgcttcaaggattgaagat 227  Q
       |||  || ||||  ||||||||| ||||||||||||||||||||||    
T  1724957 agttggggttctaggtattggtggtggaactgcttcaaggattgaagat 1725005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 335
Target Start/End: Complemental strand, 1715700 - 1715552
Alignment:
Q  190 taggatttggtggtgcaactgcttcaaggattgaagatggtatgaataacaagattggtgctattactaaatttggagattc---ttctacaaatgttgc 286  Q
    |||||||||| ||||||| |  ||||| ||||||||||||||  |||||||| ||||| | | |||  ||||||||||||||   |||| |||| |||||    
T  1715700 taggatttgggggtgcaattatttcaaagattgaagatggtaccaataacaaaattggagttcttataaaatttggagattcttcttctgcaaacgttgc 1715601  T
Q  287 cacaagttcaagcacaatcataaacaataaaaatagtgtggatcctact 335  Q
     | ||||||||   ||||||| || ||||||||||| ||||||||||||    
T  1715600 tataagttcaaattcaatcatgaaaaataaaaatagcgtggatcctact 1715552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 1760559 - 1760670
Alignment:
Q  89 gtatggtaatggtgctttatgtttgaaagatatatcaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagtgggactggaatt 188  Q
    |||| ||||||||| |||  |||||||||| |||| ||||||||| ||| ||||| ||||||||    ||||| | ||||||||||||||| ||| || |    
T  1760559 gtatagtaatggtgttttgagtttgaaagagatattaaacccttctcttgttagtctgagaaattttgagggttgtaatagtaatagtggggctgaaaat 1760658  T
Q  189 ttaggatttggt 200  Q
    ||||||||||||    
T  1760659 ttaggatttggt 1760670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 1715704 - 1715658
Alignment:
Q  15 attctaggatttggtggtgcaattacttcaaggattgaagatggtac 61  Q
    |||||||||||||| |||||||||| ||||| |||||||||||||||    
T  1715704 attctaggatttgggggtgcaattatttcaaagattgaagatggtac 1715658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 1760718 - 1760786
Alignment:
Q  258 aaatttggagattcttctacaaatgttgccacaagttcaagcacaatcataaacaataaaaatagtgtg 326  Q
    ||||| ||| |||||||||||||| |||  |||||||||| | |||||||| |||||||||||| ||||    
T  1760718 aaattcggatattcttctacaaatattgatacaagttcaaactcaatcatacacaataaaaataatgtg 1760786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 77 - 297
Target Start/End: Original strand, 3167534 - 3167739
Alignment:
Q  77 tggccctttagggtatggtaatggtgctttatgtttgaaagatatatcaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagt 176  Q
    ||||||||| ||||||| |||||||||||||| |||| |||| |||| ||||||||||||| ||||||||||||||| |||               |  |    
T  3167534 tggcccttttgggtatgataatggtgctttatctttgcaagagatattaaacccttcacttgttagtttgagaaataagaa---------------tcat 3167618  T
Q  177 gggactggaattttaggatttggtggtgcaactgcttcaaggattgaagatggtatgaataacaagattggtgctattactaaatttggagattcttcta 276  Q
    |||  ||||||| | ||  |||||||||||| | |||||||||| ||||||||||  ||||| || ||||||||||||   ||||| |||||||||||||    
T  3167619 ggggttggaattcttggtattggtggtgcaagtacttcaaggatagaagatggtacaaataataaaattggtgctattctaaaattaggagattcttcta 3167718  T
Q  277 caaatgttgccacaagttcaa 297  Q
    |||||||||| ||||||||||    
T  3167719 caaatgttgctacaagttcaa 3167739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 297
Target Start/End: Original strand, 2023090 - 2023306
Alignment:
Q  81 cctttagggtatggtaatggtgctttatgtttgaaagatatatcaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagtggga 180  Q
    ||||| |||||||||||||||| |||  ||||| |||| |||| ||||||||| ||| ||||||||||||||| | |||| || |||||||||  | ||     
T  2023090 ccttttgggtatggtaatggtggtttgggtttgcaagagatattaaacccttctcttgttagtttgagaaatatggagggcagtaatagtaattctaggg 2023189  T
Q  181 ctggaattttaggatttggtggtgcaactgcttcaaggattgaagatggtatgaataacaagattggtgctattactaaa-tttggagattcttctacaa 279  Q
     ||||||| ||||    || | ||||||| ||| ||||||||||||||||   ||||| || |||||| ||| | ||||| |||| ||||||||||||||    
T  2023190 ttggaattctaggtaccggggatgcaactactttaaggattgaagatggtgaaaataataaaattggtactaat-ctaaagtttgaagattcttctacaa 2023288  T
Q  280 atgttgccacaagttcaa 297  Q
    ||||| | ||||||||||    
T  2023289 atgttacaacaagttcaa 2023306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 342
Target Start/End: Complemental strand, 3156653 - 3156507
Alignment:
Q  196 ttggtggtgcaactgcttcaaggattgaagatggtatgaataacaagattggtgctattactaaatttggagattcttctacaaatgttgccacaagttc 295  Q
    |||||||||||| | |||||||||||||||||||||  ||||| || || |||||||||   ||||| |||||||||||||||||||||||  |||||||    
T  3156653 ttggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgctattctaaaattaggagattcttctacaaatgttgctgcaagttc 3156554  T
Q  296 aagcacaatcataaacaataaaaatagtgtggatcctactactacca 342  Q
    || | ||| |||| | ||  ||| || ||||| ||||||| ||||||    
T  3156553 aaactcaaacatagaaaagcaaattattgtggctcctacttctacca 3156507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 3138921 - 3138820
Alignment:
Q  196 ttggtggtgcaactgcttcaaggattgaagatggtatgaataacaagattggtgctattactaaatttggagattcttctacaaatgttgccacaagttc 295  Q
    |||||||||||||| |||||| ||| ||| ||||||   |||| || ||||||||||||    |||| ||||||||||||||||| ||||| |||| |||    
T  3138921 ttggtggtgcaactacttcaaagatcgaatatggtacatataataaaattggtgctattttagaattgggagattcttctacaaaggttgctacaatttc 3138822  T
Q  296 aa 297  Q
    ||    
T  3138821 aa 3138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 3156653 - 3156616
Alignment:
Q  25 ttggtggtgcaattacttcaaggattgaagatggtaca 62  Q
    |||||||||||| |||||||||||||||||||||||||    
T  3156653 ttggtggtgcaagtacttcaaggattgaagatggtaca 3156616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 3167638 - 3167675
Alignment:
Q  25 ttggtggtgcaattacttcaaggattgaagatggtaca 62  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  3167638 ttggtggtgcaagtacttcaaggatagaagatggtaca 3167675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 7490926 - 7490802
Alignment:
Q  190 taggatttggtggtgcaactgcttcaaggattgaagatggtatgaataacaagattggtgctattactaaatttggagattcttctacaaatgttgccac 289  Q
    |||| |||||||| |||| | ||||||| |||||||||||||  ||||| || ||||||||||||   ||| |||||||||||||||      |||| ||    
T  7490926 taggttttggtggagcaagtacttcaagaattgaagatggtacaaataataaaattggtgctattctaaaacttggagattcttcta------ttgctac 7490833  T
Q  290 aagttcaagcacaatcataaacaataaaaat 320  Q
    |||||||||| ||| || |||||| ||||||    
T  7490832 aagttcaagctcaaacacaaacaagaaaaat 7490802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 9011807 - 9011746
Alignment:
Q  170 taatagtgggactggaattttaggatttggtggtgcaactgcttcaaggattgaagatggta 231  Q
    |||||| ||| |||||||| |||| |||||||||||||||  ||||| ||||||||||||||    
T  9011807 taatagaggggctggaattctagggtttggtggtgcaactagttcaaagattgaagatggta 9011746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 7484269 - 7484206
Alignment:
Q  90 tatggtaatggtgctttatgtttgaaagatatatcaaacccttcactttttagtttgagaaata 153  Q
    |||||| ||||||||||  ||||||| ||| ||| | ||||||||||||||| |||||||||||    
T  7484269 tatggttatggtgctttgcgtttgaatgatgtattacacccttcactttttaatttgagaaata 7484206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 9011792 - 9011746
Alignment:
Q  14 aattctaggatttggtggtgcaattacttcaaggattgaagatggta 60  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||||    
T  9011792 aattctagggtttggtggtgcaactagttcaaagattgaagatggta 9011746  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 7490928 - 7490883
Alignment:
Q  17 tctaggatttggtggtgcaattacttcaaggattgaagatggtaca 62  Q
    |||||| |||||||| |||| ||||||||| |||||||||||||||    
T  7490928 tctaggttttggtggagcaagtacttcaagaattgaagatggtaca 7490883  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 297
Target Start/End: Original strand, 23852503 - 23852607
Alignment:
Q  196 ttggtggtgcaactgcttcaaggattgaagatggtatgaataacaaga---ttggtgctattactaaatttggagattcttctacaaatgttgccacaag 292  Q
    |||| ||||||||| ||||||| || ||||||||||  ||||| || |   |||||||||||   ||||| |||||||||||||||||| |||| |||||    
T  23852503 ttggcggtgcaactacttcaagaatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctacaaatattgctacaag 23852602  T
Q  293 ttcaa 297  Q
    |||||    
T  23852603 ttcaa 23852607  T

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