View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17465_low_5 (Length: 369)
Name: NF17465_low_5
Description: NF17465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17465_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 1548436 - 1548093
Alignment:
| Q |
16 |
catatgttactatgcttatttgttatgctcacaagtattataattgcaatcatcatatattgactaatgtttctgttttaatgagtaattagcaa-tgta |
114 |
Q |
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| T |
1548436 |
catatgttactatgcttatttgttatgctcacaagtattataattgcaatcatcatatattgactaatgtttcagttttaatgagtaattagcaaatgta |
1548337 |
T |
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| Q |
115 |
aatgtttttctgtatcgtattgtgtatctcggcttcttagctgagaagaatatatcacaccacagacgtaacatccttgagctaccaacgcagaaacaac |
214 |
Q |
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| T |
1548336 |
aatgtttttctgtatcgtattgtgtatctcggcttcttagctgagaagaatatatcacaccacagacgtaacatccttgagctaccaacgcagaaacaac |
1548237 |
T |
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| Q |
215 |
acatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaactggaaagtcaattatgaagattattagacacaccaattgtag |
314 |
Q |
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| T |
1548236 |
acatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaactggaaagtcaattatgaagattattagacacaccaattgtag |
1548137 |
T |
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| Q |
315 |
gaatagtagatacaacttttccaatttgaagcttatagagtata |
358 |
Q |
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| T |
1548136 |
gaatagtagatacaacttttccaatttgaagcttatagagtata |
1548093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 1544581 - 1544232
Alignment:
| Q |
17 |
atatgttactatgcttatttgttatgctcacaagtattataattgcaatcatcatatattgactaatgtttctgttttaatgagtaattagcaatgtaaa |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
1544581 |
atatgtaactatgcttatttgttatgctcacaagtattataattgcaatcatcatatattgactaatgtttctgttttaaagagtaattagcaatgtgaa |
1544482 |
T |
|
| Q |
117 |
tgtttttctgtatcgtattgtgtatctcggcttcttagctgagaagaatatatcacaccacagacgtaacatccttgagctaccaacgcagaaacaacac |
216 |
Q |
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| T |
1544481 |
tatttttctgtgtcgtactgtgtatctcggcttcttagctgagaagaatatatcacatcacagacctaacatccttgagctaccaacgcagaaacaacac |
1544382 |
T |
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| Q |
217 |
atgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaac--------tggaaagtcaa-ttatgaagattattagacacacca |
307 |
Q |
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| T |
1544381 |
atgaaatggatgcaatgcaagatgaatcat-atcaatccaaagaaagtttttaaacaataaaattggaaagtcaatttatgaagattattagacacacca |
1544283 |
T |
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| Q |
308 |
attgtaggaatagtagatacaacttttccaatttgaagcttatagagtata |
358 |
Q |
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| T |
1544282 |
acagtaggaatagtagatacaacttttccaatttgaagcttatagagtata |
1544232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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