View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17465_low_7 (Length: 332)

Name: NF17465_low_7
Description: NF17465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17465_low_7
NF17465_low_7
[»] chr7 (4 HSPs)
chr7 (197-320)||(41753756-41753879)
chr7 (75-137)||(41754048-41754110)
chr7 (86-138)||(7596182-7596234)
chr7 (86-138)||(17157805-17157857)
[»] chr3 (1 HSPs)
chr3 (86-138)||(35717780-35717832)
[»] chr4 (1 HSPs)
chr4 (86-137)||(34235932-34235983)
[»] chr1 (3 HSPs)
chr1 (87-138)||(6170920-6170971)
chr1 (86-138)||(2351402-2351453)
chr1 (86-138)||(40203114-40203165)
[»] chr8 (1 HSPs)
chr8 (93-137)||(18049456-18049500)
[»] chr5 (1 HSPs)
chr5 (86-138)||(31672430-31672482)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 41753879 - 41753756
Alignment:
Q  197 actactggtggaataatcgagaaatttattcttaagatcgctgcattacaacggcaacagcacgcagcacgggaacatccagcttgatacagcaattggt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41753879 actactggtggaataatcgagaaatttattcttaagatcgctgcattacaacggcaacagcacgcagcacgggaacatccagcttgatacagcaattggt 41753780  T
Q  297 gtacgttcaaatcttttcatttca 320  Q
    ||||||||||||||||||||||||    
T  41753779 gtacgttcaaatcttttcatttca 41753756  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 41754110 - 41754048
Alignment:
Q  75 attaaaataaagtaatcaatgcattgcaaattaaaacttttgacttattttatgaaataattt 137  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  41754110 attaaaataaagtaatcaatgtattgcaaattgaaacttttgacttattttatgaaataattt 41754048  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 7596182 - 7596234
Alignment:
Q  86 gtaatcaatgcattgcaaattaaaacttttgacttattttatgaaataatttc 138  Q
    ||||||||||||||| ||||| ||| ||||||||  |||||||||||||||||    
T  7596182 gtaatcaatgcattggaaattgaaatttttgactctttttatgaaataatttc 7596234  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 17157805 - 17157857
Alignment:
Q  86 gtaatcaatgcattgcaaattaaaacttttgacttattttatgaaataatttc 138  Q
    ||||||||||||||| ||||| |||| |||||||| ||||||| |||||||||    
T  17157805 gtaatcaatgcattggaaattgaaacatttgactttttttatggaataatttc 17157857  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 35717832 - 35717780
Alignment:
Q  86 gtaatcaatgcattgcaaattaaaacttttgacttattttatgaaataatttc 138  Q
    ||||||||||||||| |||||||||| ||||| || |||||||||||| ||||    
T  35717832 gtaatcaatgcattggaaattaaaacatttgattttttttatgaaatagtttc 35717780  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 34235983 - 34235932
Alignment:
Q  86 gtaatcaatgcattgcaaattaaaacttttgacttattttatgaaataattt 137  Q
    ||||||||||||||| ||||| ||| ||||||||| |||||| |||||||||    
T  34235983 gtaatcaatgcattgaaaattgaaatttttgactttttttataaaataattt 34235932  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 6170920 - 6170971
Alignment:
Q  87 taatcaatgcattgcaaattaaaacttttgacttattttatgaaataatttc 138  Q
    |||||||||||||| |||||||||| |||||||| |||| || |||||||||    
T  6170920 taatcaatgcattggaaattaaaacatttgactttttttgtggaataatttc 6170971  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 2351453 - 2351402
Alignment:
Q  86 gtaatcaatgcattgcaaattaaaacttttgacttattttatgaaataatttc 138  Q
    ||||||||||||| | |||||||||  |||||||| |||||||||||||||||    
T  2351453 gtaatcaatgcatcggaaattaaaatgtttgactt-ttttatgaaataatttc 2351402  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 40203114 - 40203165
Alignment:
Q  86 gtaatcaatgcattgcaaattaaaacttttgacttattttatgaaataatttc 138  Q
    ||||||||||||||| ||||| |||  |||||||| |||||||||||||||||    
T  40203114 gtaatcaatgcattggaaattgaaatatttgactt-ttttatgaaataatttc 40203165  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 18049500 - 18049456
Alignment:
Q  93 atgcattgcaaattaaaacttttgacttattttatgaaataattt 137  Q
    |||||||| || || ||||||||||||| ||||||||||||||||    
T  18049500 atgcattgaaatttgaaacttttgactttttttatgaaataattt 18049456  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 31672482 - 31672430
Alignment:
Q  86 gtaatcaatgcattgcaaattaaaacttttgacttattttatgaaataatttc 138  Q
    ||||||||||||||| ||||| |||| |||||||| ||||||| |||| ||||    
T  31672482 gtaatcaatgcattggaaattgaaacatttgactttttttatggaatagtttc 31672430  T

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