View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17465_low_8 (Length: 303)

Name: NF17465_low_8
Description: NF17465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17465_low_8
NF17465_low_8
[»] chr3 (3 HSPs)
chr3 (91-289)||(45207091-45207294)
chr3 (35-74)||(45207033-45207072)
chr3 (1-36)||(54840354-54840389)
[»] chr6 (1 HSPs)
chr6 (1-39)||(31854815-31854853)
[»] chr8 (3 HSPs)
chr8 (1-36)||(2805702-2805737)
chr8 (1-37)||(3293100-3293136)
chr8 (1-37)||(29790941-29790977)
[»] chr7 (3 HSPs)
chr7 (1-36)||(36905752-36905787)
chr7 (1-36)||(42086864-42086899)
chr7 (2-38)||(19072767-19072803)
[»] chr5 (2 HSPs)
chr5 (1-36)||(29627494-29627529)
chr5 (1-37)||(23988578-23988614)
[»] chr1 (4 HSPs)
chr1 (1-36)||(38458956-38458991)
chr1 (1-39)||(50876361-50876399)
chr1 (1-38)||(48265037-48265074)
chr1 (1-37)||(25531777-25531813)
[»] chr4 (2 HSPs)
chr4 (1-38)||(46212348-46212385)
chr4 (1-37)||(5744082-5744118)
[»] chr2 (1 HSPs)
chr2 (1-37)||(27559801-27559837)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 91 - 289
Target Start/End: Original strand, 45207091 - 45207294
Alignment:
Q  91 ttgtatgcagtgaatacaccaaatgtctatctct--gtgtttagcccatttaaaactatctacaataacattataaatttctatnnnnnnnn-taacaca 187  Q
    ||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||         |||||||    
T  45207091 ttgtatgtagtgaatacaccaaatgtctatctctttgtgttcagcccatttaaaactatctacaataacattataaatttctataaaaaaaaataacaca 45207190  T
Q  188 tgcatttagaattataaatttggaaggggcaaaaaagtatattttc-----atgacatattttattcaaatatatactacaaaattttgcaattcttttc 282  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||     ||||||||||||||||||||||    |||||||||||||||||||||||    
T  45207191 tgcatttagaattataaatttggaaggggaaaaaaagtatattttcataagatgacatattttattcaaatat---gtacaaaattttgcaattcttttc 45207287  T
Q  283 attatga 289  Q
    | |||||    
T  45207288 aatatga 45207294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 45207033 - 45207072
Alignment:
Q  35 taattgattaccacattatagtgaaagatatttatcaccc 74  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45207033 taattgattaccacattatagtgaaagatatttatcaccc 45207072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 54840354 - 54840389
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagta 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  54840354 gtcaactaggtcatttatttagggatggagggagta 54840389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31854853 - 31854815
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagtaatt 39  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  31854853 gtcaactgggtcatttatttagggacggagggagtaatt 31854815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2805702 - 2805737
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagta 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  2805702 gtcaactgggtcatttatttagggacggagggagta 2805737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3293136 - 3293100
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagtaa 37  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  3293136 gtcaactgggtcatttattaagggacggagggagtaa 3293100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29790977 - 29790941
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagtaa 37  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  29790977 gtcaactaggtcatttatttagggacggagggagtaa 29790941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36905752 - 36905787
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagta 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  36905752 gtcaactgggtcatttatttagggacggagggagta 36905787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42086864 - 42086899
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagta 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  42086864 gtcaactaggtcatttatttagggatggagggagta 42086899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 19072803 - 19072767
Alignment:
Q  2 tcaactgggtcatttatttagggatggagggagtaat 38  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  19072803 tcaactaggtcatttatttagggacggagggagtaat 19072767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 29627494 - 29627529
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagta 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  29627494 gtcaactgggtcatttatttagggacggagggagta 29627529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23988614 - 23988578
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagtaa 37  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  23988614 gtcaactaggtcatttatttagggacggagggagtaa 23988578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38458956 - 38458991
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagta 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  38458956 gtcaactgggtcatttattaagggatggagggagta 38458991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 50876399 - 50876361
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagtaatt 39  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  50876399 gtcaactaggtcatttatttagggacggagggagtaatt 50876361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48265037 - 48265074
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagtaat 38  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  48265037 gtcaactaggtcatttatttagggacggagggagtaat 48265074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25531813 - 25531777
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagtaa 37  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  25531813 gtcaactaggtcatttatttagggacggagggagtaa 25531777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46212385 - 46212348
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagtaat 38  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  46212385 gtcaactgagtcatttattaagggatggagggagtaat 46212348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5744118 - 5744082
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagtaa 37  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  5744118 gtcaactgggtcatttattaagggacggagggagtaa 5744082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27559801 - 27559837
Alignment:
Q  1 gtcaactgggtcatttatttagggatggagggagtaa 37  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  27559801 gtcaactgggtcatttattaagggacggagggagtaa 27559837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University