View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17466_low_1 (Length: 614)
Name: NF17466_low_1
Description: NF17466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17466_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 52289748 - 52290316
Alignment:
| Q |
1 |
tcgcacaattactccatgataatctctagaattcagagccaaaaaacactgcaatagttgctccaagtccttggcttcggacatttccatctcttctatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52289748 |
tcgcacaattactccatgataatctctagaattcagagccaaaaaacactgcaatagttgctccaagtccttggcttcagacatttccatctcttctatc |
52289847 |
T |
|
| Q |
101 |
atctctaacattgatttcttgaagtcttcgtaaggatcctttgactttttcaccaaagcaaagctttcttttaccttctcctccattctacatgacataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52289848 |
atctctaacattgatttcttgaagtcttcgtaaggatcctttgactttttcaccaaagcaaagctttcttttaccttctcctccattctacttgacataa |
52289947 |
T |
|
| Q |
201 |
ccttcgtttcggttcctcttcgattctcttccattctacttgacataaccttcgtttcttttcctctttgattctctgtaatactttgaaacctcactct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52289948 |
ccttcgtttcggttcctcttcgattctcttccattctacttgacataaccttcgtttcttttcctctttgattctctgtaatactttgaaacctcactct |
52290047 |
T |
|
| Q |
301 |
ctcaaccttctttacacgacttagcgtccttctatttgcgctagttaaatctctattctcctttttatcactaaaatttgagatagccttaactttactg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52290048 |
ctcaaccttctttacacgacttagcgtccttctatttgcgctagttaaatctttattctcctttttatcactaaaatttgagatagccttaactttactg |
52290147 |
T |
|
| Q |
401 |
tccatagtactagacgaatggaccttctcgtcttccgagaatcttgctaagcaagaaatcaacgattcactttcctcttcattgattttatcaattagaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52290148 |
tccatagtactagacgaatggaccttctcgtcttccgagaatcttgctaagcaagaaatcaacgattcactttcctcttcattgattttatcaattagaa |
52290247 |
T |
|
| Q |
501 |
actcacttcttcttgaaggaacgtcggatgtacttttccggcctttggatttcactttcttgacctttg |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52290248 |
actcacttcttcttgaaggaacgtcggatgtacttttccggcctttggatttcactttcttgacctttg |
52290316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University