View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17466_low_2 (Length: 551)
Name: NF17466_low_2
Description: NF17466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17466_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 15 - 514
Target Start/End: Complemental strand, 51939874 - 51939375
Alignment:
| Q |
15 |
agatgatgcactccgcatccacatctgaggcagcagcacagccttggaaga---ggcagaaatccagtgagggtcaagacatcataagccgcctatctga |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51939874 |
agatgatgcactccgcatccacatctgaggcagcagcacagccttggaagaagaggcagaaatccagtgagggtcaagacatcataagccgcctatctga |
51939775 |
T |
|
| Q |
112 |
ctgtattattgctcacattctctcttttcttcctactaactatgcagttcgtactagtgctttatcacagaggtggaggtacatgtggacgtttgtcaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51939774 |
ctgtattattgctcacattctctcttttcttcctactaactatgcagttcgtactagtgctttatcacagaggtggaggtacatgtggacgtttgtcaca |
51939675 |
T |
|
| Q |
212 |
aaactatgctttagtgacaacctgcttcatttttctgttccctttgaggaagcaaaaaatcgctatattgactttgtatgtagggtacttcttcttctca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51939674 |
aaactatgctttagtgacaacctgcttcatttttctgttccctttgaggaagcaaaaaatcgctatattgactttgtatgtagggtacttc---ttctca |
51939578 |
T |
|
| Q |
312 |
acagtgcaaccatccaaaaattctctctagatatttcagaaaaccttgacccctaccatattaatctgtggatatctgctatttcaaataagagagtaaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51939577 |
acagtgcaaccatccaaaaattctctctagatatttcagaaaaccttgacccctaccatattaatctgtggatatctgctatttcaaataagagagtaaa |
51939478 |
T |
|
| Q |
412 |
aaatattagtgtttccgttcgttcatggatcaactttaacctttctgcttatccccttttcaaatgtcagtccttggaggaattggtgctagaaatgatg |
511 |
Q |
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| T |
51939477 |
aaatattagtgtttccgttcgttcatggatcaactttaacctttctgcttatccccttttcaaatgtcagtccttggaggaattggtgctagaaatgatg |
51939378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 61 - 420
Target Start/End: Complemental strand, 51944823 - 51944464
Alignment:
| Q |
61 |
gaagaggcagaaatccagtgagggtcaagacatcataagccgcctatctgactgtattattgctcacattctctcttttcttcctactaactatgcagtt |
160 |
Q |
| |
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|||||| || |||||||||||||||||||| || |||||| |||| |||||| | |||| | || |||||| ||||||||||||||||| ||||||||| |
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| T |
51944823 |
gaagagacataaatccagtgagggtcaagatatgataagcgacctacctgactttgttatcggtcgcattctttcttttcttcctactaaatatgcagtt |
51944724 |
T |
|
| Q |
161 |
cgtactagtgctttatcacagaggtggaggtacatgtggacgtttgtcacaaaactatgctttagtgacaa----cctgcttcatttttctgttcccttt |
256 |
Q |
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||||| ||||||||||||||||||||| |||| |||| |||| ||||| | ||| | ||| | |||| ||| |||||| || | | | | |
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| T |
51944723 |
cgtaccggtgctttatcacagaggtggatatacaaatggatgtttctcacagacctaagttttgattacaatcatccttcttcatcttac----ctatgt |
51944628 |
T |
|
| Q |
257 |
gaggaagcaaaaaatcgctatattgactttgtatgtagggtacttcttcttctcaacagtgcaaccatccaaaaattctctctagatatttcagaaaacc |
356 |
Q |
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||| || ||||| |||| ||| ||||||||| ||||||||| ||| |||||||| |||||||||||||| ||| ||||| |||||| | | || |
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| T |
51944627 |
gagaaaagaaaaacccgctttatcaactttgtatatagggtactgcttaatctcaacactgcaaccatccaaacattttctctggatattctacataatt |
51944528 |
T |
|
| Q |
357 |
ttgacccctaccatattaatctgtggatatctgctatttcaaataagagagtaaaaaatattag |
420 |
Q |
| |
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|||| ||||||||||| |||| |||||||||| | ||||||||||||||||||||| |||||| |
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| T |
51944527 |
ttgatccctaccatatcaatcaatggatatctgttgtttcaaataagagagtaaaaattattag |
51944464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 496
Target Start/End: Complemental strand, 51944431 - 51944394
Alignment:
| Q |
459 |
cttatccccttttcaaatgtcagtccttggaggaattg |
496 |
Q |
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||||||| ||||||||||| |||||||||||||||||| |
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| T |
51944431 |
cttatccgcttttcaaatgccagtccttggaggaattg |
51944394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 37420501 - 37420356
Alignment:
| Q |
73 |
atccagtgagggtcaagacatcataagccgcctatctgactgtattattgctcacattctctcttttcttcctactaactatgcagttcgtactagtgct |
172 |
Q |
| |
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|||||||| |||||||| ||||||||| |||| ||| || ||| ||||| |||||||| |||||||||| || | | ||||||| || || |||| | |
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| T |
37420501 |
atccagtgctggtcaagatatcataagcaacctacctgtctttatcattgcccacattctttcttttcttcgtattgaagatgcagtccgcacaagtgtt |
37420402 |
T |
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| Q |
173 |
ttatcacagaggtggaggtacatgtggacgtttgtcacaaaactat |
218 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
37420401 |
ttatcacggaggtggatatacatgtggacgtttgtcacaaaactat |
37420356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 501
Target Start/End: Complemental strand, 37420135 - 37420094
Alignment:
| Q |
460 |
ttatccccttttcaaatgtcagtccttggaggaattggtgct |
501 |
Q |
| |
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||||||| |||||||||| ||| ||||||||||||||||||| |
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| T |
37420135 |
ttatcccattttcaaatgccagaccttggaggaattggtgct |
37420094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 34747525 - 34747437
Alignment:
| Q |
129 |
ttctctcttttcttcctactaactatgcagttcgtactagtgctttatcacagaggtggaggtacatgtggacgtttgtcacaaaacta |
217 |
Q |
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|||| ||||||||||||||||| |||||||| ||| |||| ||||||| ||||||||| ||| | ||||| ||| ||||||||||| |
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| T |
34747525 |
ttctttcttttcttcctactaaggatgcagtttctaccagtgttttatcaaagaggtggatatacctatggacatttatcacaaaacta |
34747437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 188
Target Start/End: Complemental strand, 34755910 - 34755803
Alignment:
| Q |
81 |
agggtcaagacatcataagccgcctatctgactgtattattgctcacattctctcttttcttcctactaactatgcagttcgtactagtgctttatcaca |
180 |
Q |
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||||||||||| | |||||| |||| ||||| ||||||| | ||||||| | ||||||||||||||| | |||||||||||||| | ||||||| | |
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| T |
34755910 |
agggtcaagacttgataagcaacctacctgaccacattattggttacattcttttttttcttcctactaaggaagcagttcgtactagcgttttatcaaa |
34755811 |
T |
|
| Q |
181 |
gaggtgga |
188 |
Q |
| |
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|| ||||| |
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| T |
34755810 |
gaagtgga |
34755803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 501
Target Start/End: Complemental strand, 34751811 - 34751775
Alignment:
| Q |
465 |
cccttttcaaatgtcagtccttggaggaattggtgct |
501 |
Q |
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| T |
34751811 |
cccttttcaaatgccagtccttagaggaattggtgct |
34751775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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