View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17466_low_3 (Length: 482)
Name: NF17466_low_3
Description: NF17466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17466_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 15 - 463
Target Start/End: Complemental strand, 42717120 - 42716672
Alignment:
| Q |
15 |
agtgacggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtatttccatagggtctttccatgcagttgcca |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42717120 |
agtgatggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtatttccatagggtctttccatgcagttgcca |
42717021 |
T |
|
| Q |
115 |
ataacatcattgttgtggctgctggaggaaattcaggaccttctcctagtactgtatccaacttggaaccatgggtgttcacagttgctgcaagtacaat |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42717020 |
ataacataattgttgtggctgctggaggaaattcaggacctgctcctagtactgtatccaacttggaaccatgggtgtttacagttgctgcaagtacaat |
42716921 |
T |
|
| Q |
215 |
tgatagagagttcactagttttgttacccttggtgacaacaaaacactcaaggtatattgattctcatattttattttcattgttattccccttactatt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
42716920 |
tgatagagagttcactagttttgttacccttggtgacaacaaaacactcaaggtatattgattgtcatattttattttcattattatttcccttactatt |
42716821 |
T |
|
| Q |
315 |
acagttaccattttactgaattagaatattctattagggtgctagcctttcagagttggaattgctgcctaataagttgtatccattgataactggtgct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42716820 |
acagttaccattttactgaattagaatattctattagggtgctagcctttcagagttggaattgctgcctaataagttgtatccattgataactggtgct |
42716721 |
T |
|
| Q |
415 |
gatgccaaatatgataatgcatcttccaaagacgcgtaagaatgctatc |
463 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42716720 |
gatgtcaaatatgataatgcatcttccaaagacgcgtaagaatactatc |
42716672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 42743745 - 42743486
Alignment:
| Q |
15 |
agtgacggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtatttccatagggtctttccatgcagttgcca |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743745 |
agtgatggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttcacaatagcagtatttccatagggtctttccatgcagttgcca |
42743646 |
T |
|
| Q |
115 |
ataacatcattgttgtggctgctggaggaaattcaggaccttctcctagtactgtatccaacttggaaccatgggtgttcacagttgctgcaagtacaat |
214 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||| ||| | |||||||||||||||| ||||| |
|
|
| T |
42743645 |
acaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctggaaccttggacgctcacagttgctgcaagcacaat |
42743546 |
T |
|
| Q |
215 |
tgatagagagttcactagttttgttacccttggtgacaacaaaacactcaaggtatattg |
274 |
Q |
| |
|
|||||||| ||||| |||| ||||| |||||| |||| |||| | ||||||||||||| |
|
|
| T |
42743545 |
agatagagatttcacaagttatgttattcttggtaacaagaaaatattcaaggtatattg |
42743486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 42753104 - 42752845
Alignment:
| Q |
15 |
agtgacggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtatttccatagggtctttccatgcagttgcca |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42753104 |
agtgatggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttcacaatagcagtatttccatagggtctttccatgcagttgcca |
42753005 |
T |
|
| Q |
115 |
ataacatcattgttgtggctgctggaggaaattcaggaccttctcctagtactgtatccaacttggaaccatgggtgttcacagttgctgcaagtacaat |
214 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||| ||| | |||||||||||||||| ||||| |
|
|
| T |
42753004 |
acaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctggaaccttggacgctcacagttgctgcaagcacaat |
42752905 |
T |
|
| Q |
215 |
tgatagagagttcactagttttgttacccttggtgacaacaaaacactcaaggtatattg |
274 |
Q |
| |
|
|||||||| ||||| |||| ||||| |||||| |||| |||| | ||||||||||||| |
|
|
| T |
42752904 |
agatagagatttcacaagttatgttattcttggtaacaagaaaatattcaaggtatattg |
42752845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 42734765 - 42735019
Alignment:
| Q |
15 |
agtgacggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtatttccatagggtctttccatgcagttgcca |
114 |
Q |
| |
|
||||| ||||| || |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42734765 |
agtgatggtgttgatgtgctttcagtgtctttgagtggtgattttcctgttgaatttcacgatagcagtatttccatagggtctttccatgcagttgcca |
42734864 |
T |
|
| Q |
115 |
ataacatcattgttgtggctgctggaggaaattcaggaccttctcctagtactgtatccaacttggaaccatgggtgttcacagttgctgcaagtacaat |
214 |
Q |
| |
|
| ||||| |||||||||||| ||||||| ||||||||||||||| ||| |||||| | ||| ||||||| ||| | |||||||||||||||| ||||| |
|
|
| T |
42734865 |
acaacataattgttgtggcttctggaggtaattcaggaccttcttctaacactgtagcaaacatggaaccgtggatcctcacagttgctgcaagcacaat |
42734964 |
T |
|
| Q |
215 |
tgatagagagttcactagttttgttacccttggtgacaacaaaacactcaaggta |
269 |
Q |
| |
|
||||||||| ||||| |||| |||| |||||| |||| |||| |||||||||| |
|
|
| T |
42734965 |
tgatagagacttcacaagttatgttgtacttggtaacaagaaaatactcaaggta |
42735019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 80 - 274
Target Start/End: Complemental strand, 42762661 - 42762467
Alignment:
| Q |
80 |
cagtatttccatagggtctttccatgcagttgccaataacatcattgttgtggctgctggaggaaattcaggaccttctcctagtactgtatccaacttg |
179 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
42762661 |
cagtatttccataggatcttttcatgcagttgccaacaacatcattgttgtggcttctggaggtaattcaggacctgttcctagtactgtatccaacttg |
42762562 |
T |
|
| Q |
180 |
gaaccatgggtgttcacagttgctgcaagtacaattgatagagagttcactagttttgttacccttggtgacaacaaaacactcaaggtatattg |
274 |
Q |
| |
|
||||| ||| | |||||||||||||||| |||||||||||||| ||||| |||| ||||| |||||| |||| |||| ||||||||||||||| |
|
|
| T |
42762561 |
gaaccttggacgctcacagttgctgcaagcacaattgatagagatttcacaagttatgttattcttggtaacaaaaaaatactcaaggtatattg |
42762467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 42769598 - 42769345
Alignment:
| Q |
17 |
tgacggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtatttccatagggtctttccatgcagttgccaat |
116 |
Q |
| |
|
||||||||| || ||| |||| | |||| ||||||||||| || || |||||||| || ||||||||| | ||||||||||||||||||||||| ||| |
|
|
| T |
42769598 |
tgacggtgttgatgtgatttcggcgtctgtgggtggtgat---cccgtagaattttatgaaagcagtattgctatagggtctttccatgcagttgctaat |
42769502 |
T |
|
| Q |
117 |
aacatcattgttgtggctgctggaggaaattcaggaccttctcctagtactgtatccaacttggaaccatgggtgttcacagttgctgcaagtacaattg |
216 |
Q |
| |
|
||| |||| || | ||| |||||| |||||||| || | |||| ||||||||||||||| ||| | ||||||||||||||||||||| | |
|
|
| T |
42769501 |
ggcattgttgtagttagttctgctggaaatacaggacctaaacccaaaactgcatccaacttggaaccgtggtcgatcacagttgctgcaagtacaacgg |
42769402 |
T |
|
| Q |
217 |
atagagagttcactagttttgttacccttggtgacaacaaaacactcaaggtatatt |
273 |
Q |
| |
|
||||||| |||||||||| |||||| |||||| |||| |||| |||||||||||||| |
|
|
| T |
42769401 |
atagagaattcactagttatgttactcttggtaacaagaaaatactcaaggtatatt |
42769345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 42762236 - 42762155
Alignment:
| Q |
348 |
ttagggtgctagcctttcagagttggaattgctgcctaataagttgtatccattgataactggtgctgatgccaaatatgat |
429 |
Q |
| |
|
|||||| ||||||||||||||| | ||||| | ||| |||||||||| |||||||||| || |||||||| ||||| |||| |
|
|
| T |
42762236 |
ttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgat |
42762155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 23040729 - 23040988
Alignment:
| Q |
15 |
agtgacggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtatttccatagggtctttccatgcagttgcca |
114 |
Q |
| |
|
||||| ||||| || || |||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23040729 |
agtgatggtgttgatgtactttcagtgtctttgggtagaaattttcctgttgaatttcacaatagcagtatttccatagggtctttccatgcagttgcca |
23040828 |
T |
|
| Q |
115 |
ataacatcattgttgtggctgctggaggaaattcaggaccttctcctagtactgtatccaacttggaaccatgggtgttcacagttgctgcaagtacaat |
214 |
Q |
| |
|
| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||| ||||| |
|
|
| T |
23040829 |
acaacatcattgttgtgtctggtggaggaaattcaggacctgatcctagtactgtatccaacttggaaccttggacacttacagttgctgcaagcacaat |
23040928 |
T |
|
| Q |
215 |
tgatagagagttcactagttttgttacccttggtgacaacaaaacactcaaggtatattg |
274 |
Q |
| |
|
|||| |||| ||||| || | ||||| |||||| |||| |||| ||||||||||||||| |
|
|
| T |
23040929 |
tgatcgagatttcacaagctatgttattcttggtaacaagaaaatactcaaggtatattg |
23040988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 31050944 - 31050902
Alignment:
| Q |
186 |
tgggtgttcacagttgctgcaagtacaattgatagagagttca |
228 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
31050944 |
tgggtgttcactgttgctgctagtacaattgatagagacttca |
31050902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University