View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17466_low_4 (Length: 409)

Name: NF17466_low_4
Description: NF17466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17466_low_4
NF17466_low_4
[»] chr4 (8 HSPs)
chr4 (18-315)||(17135521-17135818)
chr4 (23-206)||(17348162-17348345)
chr4 (206-315)||(17347998-17348101)
chr4 (102-165)||(28939685-28939748)
chr4 (329-398)||(17135838-17135898)
chr4 (329-398)||(17347918-17347978)
chr4 (107-172)||(55296502-55296567)
chr4 (107-172)||(55712446-55712511)
[»] chr2 (1 HSPs)
chr2 (18-173)||(37090709-37090864)
[»] chr3 (1 HSPs)
chr3 (97-162)||(53749610-53749675)
[»] chr1 (1 HSPs)
chr1 (103-156)||(8571006-8571059)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 17135521 - 17135818
Alignment:
Q  18 ggatgaatgacacactattgacagcatatctttgttttccattgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcattccata 117  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17135521 ggataaatgacacactattgacagcatatctttgttttcctttgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcattccata 17135620  T
Q  118 atggtaggatccttgtggatttggtcttggtccacttgctgtaagattcctcctgattcaattaatcatttgttaaagtcagcatgggacacggaaactt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  17135621 atggtaggatccttgtggatttggtcttggtccacttgctgtaagattcctcctggttcaattaaccatttgttaaagtcagcatgggacacggaaactt 17135720  T
Q  218 gagatcgaaagtgtgtttggtgtccaacgattgtcagcattggacactgatatgtgcagtaatttatattcaagaactagtttgcttatatgtccaac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17135721 gagatcgaaagtgtgtttggtgtccaacgattgtcagcattggacaccgatatgtgcagtaatttatattcaagaactagtttgcttatatgtacaac 17135818  T

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Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 17348345 - 17348162
Alignment:
Q  23 aatgacacactattgacagcatatctttgttttccattgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcattccataatggt 122  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17348345 aatgacacaccgttgacagcatatctttgttttccattgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcattccataatggt 17348246  T
Q  123 aggatccttgtggatttggtcttggtccacttgctgtaagattcctcctgattcaattaatcatttgttaaagtcagcatggga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  17348245 aggatccttgtggatttggtcttggtccacttgctgtaagattcctcctggttcaattaaccatttgttaaagtcagcatggga 17348162  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 206 - 315
Target Start/End: Complemental strand, 17348101 - 17347998
Alignment:
Q  206 acacggaaacttgagatcgaaagtgtgtttggtgtccaacgattgtcagcattggacactgatatgtgcagtaatttatattcaagaactagtttgctta 305  Q
    |||||||||||||||||||||||||||||||||||| |||||      || |||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  17348101 acacggaaacttgagatcgaaagtgtgtttggtgtctaacga------gcgttggacaccgatgtgtgtagtaatttatattcaagaactagtttgctta 17348008  T
Q  306 tatgtccaac 315  Q
    ||||| ||||    
T  17348007 tatgtacaac 17347998  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 28939685 - 28939748
Alignment:
Q  102 tgtttatcattccataatggtaggatccttgtggatttggtcttggtccacttgctgtaagatt 165  Q
    |||||||||| ||||| ||||| |||||||||||||| || |||||||||||||| ||||||||    
T  28939685 tgtttatcataccatagtggtatgatccttgtggattaggccttggtccacttgcagtaagatt 28939748  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 17135838 - 17135898
Alignment:
Q  329 gaaattgcgtacgttagatatgattaactaactgccttaactgccatgaattagtttgcttataattcat 398  Q
    ||||||||| ||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  17135838 gaaattgcgcacgttagatatgattaac---------taactgccatgaattagtttgcttataattcat 17135898  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 17347978 - 17347918
Alignment:
Q  329 gaaattgcgtacgttagatatgattaactaactgccttaactgccatgaattagtttgcttataattcat 398  Q
    ||||||||| ||||||||||||||||||||||||||         |||||||||||||||||||||||||    
T  17347978 gaaattgcgcacgttagatatgattaactaactgcc---------atgaattagtttgcttataattcat 17347918  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 55296567 - 55296502
Alignment:
Q  107 atcattccataatggtaggatccttgtggatttggtcttggtccacttgctgtaagattcctcctg 172  Q
    |||| |||||| || || |||||||| || ||||||||||||||||||||||| || |||| ||||    
T  55296567 atcaatccatagtgataagatccttgagggtttggtcttggtccacttgctgtcaggttccacctg 55296502  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 55712511 - 55712446
Alignment:
Q  107 atcattccataatggtaggatccttgtggatttggtcttggtccacttgctgtaagattcctcctg 172  Q
    |||| |||||| ||||| |||| ||| || ||||||||||||||||||||||| || |||| ||||    
T  55712511 atcaatccatagtggtaagatcattgagggtttggtcttggtccacttgctgtcaggttccacctg 55712446  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 37090709 - 37090864
Alignment:
Q  18 ggatgaatgacacactattgacagcatatctttgttttccattgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcattccata 117  Q
    ||||||| || |||||||| |||||||||||||| || |||||||||| ||| ||||| |||| |||||| |||||||| || ||||||||||  |||||    
T  37090709 ggatgaacgaaacactattaacagcatatctttgcttgccattgataactggtgcagagttttcaagtcttattgtacgcgtcgtgtttatcaaaccata 37090808  T
Q  118 atggtaggatccttgtggatttggtcttggtccacttgctgtaagattcctcctga 173  Q
    |||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||    
T  37090809 atggtaagatccttgcggattaggtcttggtccactagccgtaagattcctcctga 37090864  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 53749610 - 53749675
Alignment:
Q  97 tgttgtgtttatcattccataatggtaggatccttgtggatttggtcttggtccacttgctgtaag 162  Q
    |||||||||||| |  || |||||||||||||||||||| || || ||||||||||||||||||||    
T  53749610 tgttgtgtttatgagaccgtaatggtaggatccttgtgggttaggccttggtccacttgctgtaag 53749675  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 8571006 - 8571059
Alignment:
Q  103 gtttatcattccataatggtaggatccttgtggatttggtcttggtccacttgc 156  Q
    ||||||||| || |||||||| |||||||| |||||||||||||||||||||||    
T  8571006 gtttatcatgccgtaatggtatgatccttgcggatttggtcttggtccacttgc 8571059  T

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