View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17466_low_6 (Length: 307)
Name: NF17466_low_6
Description: NF17466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17466_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 41302024 - 41302337
Alignment:
| Q |
1 |
ataatgtaagaccatc-tatctcatttatgcatcatataattggcctccaaaaatatgtatta-------agctggnnnnnnnnnnnatatgaaatctta |
92 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
41302024 |
ataatgtaagaccttcgtatctcatttatgcatcatataattggcctccaaaaatatgtattactatttaagctgggttttttt---atatgaaatctta |
41302120 |
T |
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| Q |
93 |
tatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttatataatcatgatgagattcttgaaagaaagaaag |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41302121 |
tatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttatataatcatgatgagactcttgaaagaaagaaag |
41302220 |
T |
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| Q |
193 |
ttccactataagaaaaacac----------ccgattactcccaaaatttaaaatatttcttttttgggaagtattaaatttattttcctgccctattttt |
282 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41302221 |
ttccactataagaaaaacacaactggttttccgattactcccaaaatttaaaatatttcttttttgggaagtattaaatttattttcctgccctattttt |
41302320 |
T |
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| Q |
283 |
ctacgggttacccccta |
299 |
Q |
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||||||||||||||||| |
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| T |
41302321 |
ctacgggttacccccta |
41302337 |
T |
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