View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17466_low_8 (Length: 271)
Name: NF17466_low_8
Description: NF17466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17466_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 31006178 - 31005937
Alignment:
| Q |
13 |
aatatccaccagagatctcacactgagcacaatcctcagcttttctccaattaagcacaaacccttttttcatagctgaaccaaatccatttatcaaacc |
112 |
Q |
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| T |
31006178 |
aataaccaccagagatctcacactgagcacaatcctcagcttttctccaattaagcacaaacccttttttcatagctgaaccaaatccatttatcaaacc |
31006079 |
T |
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| Q |
113 |
accaacaacatcatttaactcatcactcttcacaatcacattaacatgttcctcacacttccaattatcatagccaatttcaccttcatcactagccaaa |
212 |
Q |
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| T |
31006078 |
accaacaacatcatttaactcatcactcttcacaatcacattaacatgttcctcacacttccaattatcatagccaatttcaccttcatcactagccaaa |
31005979 |
T |
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| Q |
213 |
atcacataagacttcaatttttcatcattactaagttcaaag |
254 |
Q |
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| T |
31005978 |
atcacataagacttcaatttttcatcattactaagttcaaag |
31005937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 245
Target Start/End: Complemental strand, 30937921 - 30937715
Alignment:
| Q |
54 |
tttctccaattaagcacaaacccttttttcatagctgaaccaaatccatttatcaaaccaccaacaacatcatttaact--catc--------actcttc |
143 |
Q |
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|||||| ||| ||||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||| | || |||||| |
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| T |
30937921 |
tttctcaaatcaagcacaaacccttttttcatagttgaaccaaatcgaataatcaaaccaccaacaacatcatttaacttccttcaaaaagaaactcttt |
30937822 |
T |
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| Q |
144 |
acaatcacattaacatgttcctcacacttccaattatcatagccaatttcaccttcatcactagcca-----aaatcacataagacttcaatttttcatc |
238 |
Q |
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|||||||| ||||||||||||||| |||| |||||||||| ||||||| |||||||| ||||| | || ||||||| |||||||||||||| |
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| T |
30937821 |
acaatcaccacaacatgttcctcacaattcctattatcatagacaatttctgcttcatcatcagccacaaacacataacataaggcttcaatttttcata |
30937722 |
T |
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| Q |
239 |
attacta |
245 |
Q |
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||||||| |
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| T |
30937721 |
attacta |
30937715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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