View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17467_high_1 (Length: 346)
Name: NF17467_high_1
Description: NF17467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17467_high_1 |
 | |
|
| [»] scaffold1343 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 4 - 297
Target Start/End: Complemental strand, 45783273 - 45782980
Alignment:
| Q |
4 |
aaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttcatatatctaatgagagatcatactatttatatcaaaagaaatccaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45783273 |
aaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttcatatatctaatgagagatcatactatttatatcaaaagaaatccaa |
45783174 |
T |
|
| Q |
104 |
tggtatgtgttctacttatcatttatttactacttagtatgatcctactaattgaccaaaaccaaatatgaaattacctctgtgatctattaggatacct |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45783173 |
tggtatgtgttctacttatcatttatttactacttagtatgatcctactaattgaccaaaaccaaatatgaaattacctctgtgatctattaggatacca |
45783074 |
T |
|
| Q |
204 |
tcacacaagaagcattgacagagggtactataattgaaccatcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtat |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45783073 |
ccacacaagaagcattgacagagggtactataattgaaccatcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtat |
45782980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 37592218 - 37592299
Alignment:
| Q |
243 |
catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtatgtatttacgcatgttttaatgaatatt |
324 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37592218 |
catcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtatgtatttacgcatgttttaatgaatatt |
37592299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 37694577 - 37694658
Alignment:
| Q |
243 |
catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtatgtatttacgcatgttttaatgaatatt |
324 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37694577 |
catcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtatgtatttacgcatgttttaatgaatatt |
37694658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 37709506 - 37709587
Alignment:
| Q |
243 |
catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtatgtatttacgcatgttttaatgaatatt |
324 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37709506 |
catcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtatgtatttacgcatgttttaatgaatatt |
37709587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 37821619 - 37821700
Alignment:
| Q |
243 |
catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtatgtatttacgcatgttttaatgaatatt |
324 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821619 |
catcacagcttaaagcaacaatacattttactcatattttcatatgaatgtgtatgtatttacgcatgttttaatgaatatt |
37821700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 37531011 - 37531092
Alignment:
| Q |
243 |
catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtatgtatttacgcatgttttaatgaatatt |
324 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37531011 |
catcacagcttaaagcaacaatacgttttactcataatttcatatgaatgtgtatgtatttacgcatgttttaatggatatt |
37531092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1343 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1343
Description:
Target: scaffold1343; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 273 - 327
Alignment:
| Q |
4 |
aaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttca |
58 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
273 |
aaaatcagatgcctaaagaaaaactgataatgaactagttttctaattaacttca |
327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University