View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17467_low_4 (Length: 207)
Name: NF17467_low_4
Description: NF17467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17467_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 42983448 - 42983627
Alignment:
| Q |
18 |
tgttcgtcacctgagttgctggattcagttagattttaggctgagnnnnnnncttgacactgatgtgtaagatatccgtaacagccatcagtagaacata |
117 |
Q |
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| T |
42983448 |
tgttcgtcgcctgagttgctggattcagttagattttaggctg--tttttttcttgacactgatgtgtaagatatccgtaacagccatcagtagaacata |
42983545 |
T |
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| Q |
118 |
cacaacagaggccctcatattccacc------tgataccaatgatttctcattcacaccttttctataataggtttgttcat |
193 |
Q |
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| T |
42983546 |
cacaacggaggccctcatattccacctgatagtgataccaatgatttctcattcacaccttttctataataggtttgttcat |
42983627 |
T |
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