View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_high_1 (Length: 611)
Name: NF17468_high_1
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Original strand, 4512629 - 4513235
Alignment:
| Q |
1 |
ctagattactcttataattcttctatctctgcagggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512629 |
ctagattactcttataattcttctatctctgcagggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacac |
4512728 |
T |
|
| Q |
101 |
gaacctgttgagaaacttgtagatgctgttaaagtacaatctctgtctcctattcgtccactnnnnnnnnnnnnnnnnnnntcggagagaaaagaagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4512729 |
gaacctgttgagaaacttgtagatgctgttaaagtacaatctctgtctcctattcgtccactcacacacaagcacacacactcggagagaaaagaagttt |
4512828 |
T |
|
| Q |
201 |
caaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaacttttactcaggatgttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512829 |
caaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaacttttactcaggatgttgtt |
4512928 |
T |
|
| Q |
301 |
gaagcgatggcctctttaaataaggtactttgtcaacctattcatcatcccaatatgcaatttgatgcttatgttatctgaatccatgcgccatatggta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4512929 |
gaagcgatggcctctttaaataaggtactttgtcaacctattcatcatcccaatatgcaatttgatgcttatgttatctgaatccatgtgccatatggta |
4513028 |
T |
|
| Q |
401 |
atgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgtactgcagaagaagcttatacgtggactcaggtaatgtgaaaa |
500 |
Q |
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| T |
4513029 |
atgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgtactgcagaagaagcttatacgtggactcaggtaatgtgaaaa |
4513128 |
T |
|
| Q |
501 |
cacggctagtagctttatgttgaaaatttcggcttccttatcacttcatatggatgataacgaagaatgactcttctcattcgttttttattcattgtcc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4513129 |
cacggctagtagctttatgttgaaaatttcggcttccttatcacttcatatggatgataacgaagaatgactcttctcattcgttttttattcattgtcc |
4513228 |
T |
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| Q |
601 |
gtctgtg |
607 |
Q |
| |
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|| |||| |
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| T |
4513229 |
gtttgtg |
4513235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 43206699 - 43206652
Alignment:
| Q |
62 |
tcacttcaacatttcaagaagccatgggctcatgaacacgaacctgtt |
109 |
Q |
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| T |
43206699 |
tcacttcaacacttcaagaagccttgggctcatgaacacgagcctgtt |
43206652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 399 - 493
Target Start/End: Complemental strand, 43432373 - 43432279
Alignment:
| Q |
399 |
taatgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgtactgcagaagaagcttatacgtggactcaggtaat |
493 |
Q |
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||||||| | ||||||||||||||||| |||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||| |
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| T |
43432373 |
taatgcttgtagaaacctattattctttctctttccaacccaacgtcacagtccgaatgtactgctgaagaagcttatacgtggacacaggtaat |
43432279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 43432742 - 43432638
Alignment:
| Q |
33 |
agggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacacgaacctgttgagaaacttgtagatgctgttaa |
132 |
Q |
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|||| |||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || ||| | ||||||||||| |
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| T |
43432742 |
agggattgattgtcagttcccgtaaagaatcactccaacatttcaagaagccgtgggctcatgaacacgaacctgttaaaaaccttcttgatgctgttaa |
43432643 |
T |
|
| Q |
133 |
agtac |
137 |
Q |
| |
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|||| |
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|
| T |
43432642 |
tgtac |
43432638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 346
Target Start/End: Complemental strand, 43432557 - 43432439
Alignment:
| Q |
228 |
ttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaacttttactcaggatgttgttgaagcgatggcctctttaaataaggta |
327 |
Q |
| |
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||||||| ||||||||||||||||| | ||||||||||| || ||||| || | ||||| | || || ||||| |||||||||||| | || ||||| |
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| T |
43432557 |
ttttcagaaaattaagccaacagtgcttattggaacatcgggacaaggaagtgcgtttaccaaagaggtggttgaggcgatggcctctattaacgaggta |
43432458 |
T |
|
| Q |
328 |
ctttgtcaacctattcatc |
346 |
Q |
| |
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||| ||||| ||| ||||| |
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| T |
43432457 |
cttagtcaatctactcatc |
43432439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 3533801 - 3533733
Alignment:
| Q |
200 |
tcaaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagg |
269 |
Q |
| |
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|||||||| ||| |||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||| |
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| T |
3533801 |
tcaaatttctcatatttgaatgttttctttt-cggcaaattaagccaacagtgttgattggaatatcagg |
3533733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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