View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17468_high_11 (Length: 426)

Name: NF17468_high_11
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17468_high_11
NF17468_high_11
[»] chr7 (26 HSPs)
chr7 (1-379)||(42220169-42220548)
chr7 (1-87)||(34651919-34652005)
chr7 (1-87)||(41002117-41002203)
chr7 (1-87)||(7667030-7667117)
chr7 (1-87)||(28437407-28437494)
chr7 (1-87)||(33113504-33113591)
chr7 (1-88)||(44720210-44720297)
chr7 (1-84)||(38235923-38236006)
chr7 (1-87)||(33810078-33810164)
chr7 (1-87)||(43188986-43189072)
chr7 (1-81)||(18789026-18789106)
chr7 (1-50)||(47275905-47275954)
chr7 (1-85)||(42620220-42620304)
chr7 (1-87)||(5967918-5968005)
chr7 (1-84)||(16568627-16568710)
chr7 (1-84)||(16596952-16597035)
chr7 (1-87)||(23620660-23620746)
chr7 (1-87)||(43665035-43665121)
chr7 (1-87)||(33406497-33406584)
chr7 (1-87)||(19644422-19644510)
chr7 (10-87)||(39410244-39410321)
chr7 (1-49)||(43778479-43778527)
chr7 (4-50)||(12863556-12863602)
chr7 (1-50)||(46611786-46611835)
chr7 (1-50)||(36747425-36747476)
chr7 (10-50)||(42471561-42471601)
[»] chr3 (32 HSPs)
chr3 (1-88)||(23163652-23163739)
chr3 (1-87)||(49860965-49861051)
chr3 (1-87)||(30121388-30121474)
chr3 (1-87)||(41961843-41961929)
chr3 (1-87)||(46017334-46017420)
chr3 (1-88)||(47714538-47714625)
chr3 (1-87)||(43237419-43237505)
chr3 (1-87)||(47789312-47789398)
chr3 (1-87)||(49682867-49682953)
chr3 (1-88)||(17642718-17642805)
chr3 (1-87)||(43007390-43007474)
chr3 (1-95)||(47434151-47434246)
chr3 (1-87)||(3042994-3043080)
chr3 (1-87)||(33982605-33982691)
chr3 (1-87)||(38515366-38515452)
chr3 (4-50)||(45555769-45555815)
chr3 (1-86)||(15499166-15499251)
chr3 (1-86)||(38526282-38526367)
chr3 (1-87)||(25428797-25428883)
chr3 (1-87)||(30131752-30131838)
chr3 (1-50)||(7661165-7661215)
chr3 (1-87)||(34306726-34306812)
chr3 (1-87)||(55445036-55445124)
chr3 (1-88)||(2420788-2420875)
chr3 (1-86)||(36796553-36796639)
chr3 (1-50)||(38593081-38593130)
chr3 (1-81)||(4247246-4247326)
chr3 (1-49)||(46312324-46312372)
chr3 (1-33)||(55439713-55439745)
chr3 (1-50)||(31178150-31178199)
chr3 (1-51)||(42583199-42583251)
chr3 (3-50)||(27055815-27055863)
[»] chr2 (27 HSPs)
chr2 (1-87)||(8990829-8990915)
chr2 (1-88)||(7184250-7184337)
chr2 (1-86)||(32243604-32243690)
chr2 (1-99)||(40357586-40357685)
chr2 (1-87)||(14008195-14008281)
chr2 (1-87)||(18018464-18018550)
chr2 (1-50)||(3038850-3038899)
chr2 (1-50)||(44020468-44020517)
chr2 (1-85)||(18826094-18826178)
chr2 (1-86)||(726077-726162)
chr2 (1-87)||(10165542-10165628)
chr2 (1-87)||(25955700-25955786)
chr2 (1-87)||(36567144-36567230)
chr2 (1-50)||(38294017-38294066)
chr2 (1-81)||(8555648-8555728)
chr2 (1-87)||(8410795-8410882)
chr2 (1-87)||(31550127-31550214)
chr2 (1-87)||(38023312-38023399)
chr2 (1-87)||(4042093-4042179)
chr2 (1-47)||(30312333-30312379)
chr2 (1-50)||(13765842-13765891)
chr2 (1-87)||(31899222-31899308)
chr2 (1-84)||(18780513-18780596)
chr2 (1-48)||(29880893-29880940)
chr2 (1-87)||(30265224-30265311)
chr2 (10-48)||(14363416-14363454)
chr2 (1-82)||(28554366-28554447)
[»] chr6 (12 HSPs)
chr6 (1-87)||(26574261-26574347)
chr6 (1-87)||(24735009-24735097)
chr6 (1-87)||(5825461-5825547)
chr6 (1-87)||(26480997-26481083)
chr6 (1-85)||(23094996-23095080)
chr6 (1-81)||(34914756-34914836)
chr6 (1-87)||(29241699-29241785)
chr6 (4-82)||(4909751-4909830)
chr6 (1-87)||(1029422-1029507)
chr6 (4-87)||(31345235-31345319)
chr6 (1-49)||(33212449-33212497)
chr6 (1-50)||(16329508-16329557)
[»] chr5 (16 HSPs)
chr5 (1-87)||(4648853-4648939)
chr5 (4-136)||(1658309-1658439)
chr5 (1-87)||(35701532-35701618)
chr5 (4-87)||(25027054-25027137)
chr5 (1-87)||(17093026-17093112)
chr5 (1-87)||(33718310-33718396)
chr5 (1-87)||(25598635-25598721)
chr5 (1-83)||(35868959-35869041)
chr5 (1-50)||(38302261-38302310)
chr5 (1-48)||(27480077-27480124)
chr5 (1-87)||(41638498-41638584)
chr5 (4-87)||(10295617-10295701)
chr5 (1-87)||(26149732-26149819)
chr5 (1-86)||(32760885-32760972)
chr5 (1-87)||(2021109-2021196)
chr5 (1-87)||(9684657-9684743)
[»] chr1 (38 HSPs)
chr1 (1-87)||(11017730-11017816)
chr1 (1-87)||(23871329-23871415)
chr1 (4-87)||(12293944-12294027)
chr1 (1-87)||(13255473-13255559)
chr1 (1-88)||(2925800-2925887)
chr1 (1-87)||(33991670-33991757)
chr1 (1-87)||(15463940-15464026)
chr1 (1-87)||(27500113-27500199)
chr1 (1-87)||(39889524-39889610)
chr1 (1-87)||(45565259-45565344)
chr1 (1-87)||(7965569-7965656)
chr1 (1-88)||(32300184-32300271)
chr1 (1-87)||(42488492-42488579)
chr1 (1-87)||(1688083-1688169)
chr1 (1-87)||(42161919-42162005)
chr1 (1-87)||(47905555-47905641)
chr1 (8-87)||(8156211-8156291)
chr1 (1-87)||(13061262-13061349)
chr1 (1-48)||(17675325-17675372)
chr1 (1-88)||(32299231-32299318)
chr1 (1-87)||(50247725-50247811)
chr1 (1-87)||(1523724-1523810)
chr1 (1-87)||(26940708-26940794)
chr1 (1-87)||(47206290-47206376)
chr1 (1-50)||(9173652-9173701)
chr1 (1-50)||(30543266-30543315)
chr1 (10-87)||(38795103-38795180)
chr1 (1-85)||(50402870-50402955)
chr1 (1-61)||(36668541-36668601)
chr1 (4-87)||(896362-896444)
chr1 (10-84)||(28773257-28773333)
chr1 (4-82)||(50476660-50476738)
chr1 (1-50)||(2175463-2175513)
chr1 (1-51)||(14153240-14153290)
chr1 (1-83)||(28748319-28748401)
chr1 (1-87)||(51246440-51246526)
chr1 (1-88)||(938112-938200)
chr1 (3-87)||(7401432-7401516)
[»] scaffold1562 (1 HSPs)
scaffold1562 (1-87)||(269-356)
[»] scaffold1158 (1 HSPs)
scaffold1158 (1-87)||(2237-2324)
[»] chr8 (17 HSPs)
chr8 (1-87)||(3404439-3404526)
chr8 (1-87)||(34272644-34272730)
chr8 (1-87)||(37659397-37659483)
chr8 (1-87)||(4734362-4734448)
chr8 (1-82)||(25033509-25033590)
chr8 (1-86)||(33230913-33230999)
chr8 (3-87)||(2474633-2474717)
chr8 (1-83)||(15108135-15108216)
chr8 (1-87)||(13864958-13865044)
chr8 (1-87)||(36102756-36102842)
chr8 (4-88)||(6839664-6839747)
chr8 (1-49)||(34349844-34349892)
chr8 (7-50)||(43733017-43733060)
chr8 (1-88)||(36906316-36906405)
chr8 (4-49)||(7317-7362)
chr8 (9-87)||(1941916-1941994)
chr8 (1-50)||(34148483-34148531)
[»] scaffold0636 (1 HSPs)
scaffold0636 (1-87)||(8520-8606)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-87)||(35321-35407)
[»] chr4 (33 HSPs)
chr4 (1-87)||(13270112-13270198)
chr4 (1-87)||(17873325-17873411)
chr4 (1-85)||(38317096-38317180)
chr4 (1-87)||(3126878-3126964)
chr4 (1-87)||(32060775-32060861)
chr4 (1-87)||(32648870-32648956)
chr4 (1-87)||(41844564-41844650)
chr4 (1-50)||(23708265-23708314)
chr4 (1-85)||(24280040-24280124)
chr4 (1-85)||(24291514-24291598)
chr4 (6-86)||(50642953-50643033)
chr4 (1-87)||(904326-904412)
chr4 (1-87)||(20534056-20534143)
chr4 (9-87)||(17622339-17622417)
chr4 (1-87)||(38366156-38366242)
chr4 (1-87)||(49404489-49404575)
chr4 (4-85)||(16535823-16535904)
chr4 (1-86)||(36151237-36151322)
chr4 (1-50)||(48830717-48830766)
chr4 (1-86)||(21730192-21730279)
chr4 (1-81)||(41363684-41363764)
chr4 (9-88)||(21295983-21296062)
chr4 (1-87)||(37756589-37756675)
chr4 (1-51)||(52594528-52594578)
chr4 (1-50)||(47669939-47669988)
chr4 (1-81)||(7182063-7182143)
chr4 (1-138)||(32948342-32948479)
chr4 (1-87)||(22558906-22558991)
chr4 (1-46)||(31530148-31530193)
chr4 (1-87)||(15451203-15451289)
chr4 (1-87)||(24662613-24662699)
chr4 (10-87)||(50640256-50640333)
chr4 (1-49)||(53013716-53013764)
[»] scaffold0717 (1 HSPs)
scaffold0717 (1-87)||(1707-1794)
[»] scaffold0059 (2 HSPs)
scaffold0059 (6-87)||(67901-67982)
scaffold0059 (6-87)||(76006-76087)
[»] scaffold0013 (1 HSPs)
scaffold0013 (6-87)||(107675-107756)
[»] scaffold0952 (1 HSPs)
scaffold0952 (1-87)||(3535-3622)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-84)||(4406-4489)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 42220169 - 42220548
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc-tgcaaaactctc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||| |||||| |||||    
T  42220169 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaatagaaatttttttcctatttttctatatatttccaaccctgcaaagctctc 42220268  T
Q  100 tctttctctccccccttcaaacactcaaacaaagcctaagcgaaaaaagactatatttgtttgggaaggggcattgcttgcagaactatcctacatgtta 199  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  42220269 tctttctctccccccttcaaacactcaaacaaaacctaaacgaaaaaagactatatttgtttgggaaggtgcattgcttgcagaactatccttcatgtta 42220368  T
Q  200 tcttcaacttctctttcatctcatgaagataaattgtgttgacaaggtcgcgcggaagcaattttcttggaaaaatcaacccacacatgcgcgcgcacac 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||  |||||||||| |||||||||||||||||||||||||||||    
T  42220369 tcttcaacttctctttcatctcatgaagataaattgtgttgacaaggtggtgtggaagagattttcttggtaaaatcaacccacacatgcgcgcgcacac 42220468  T
Q  300 atatataacacttgttttaacactcacgcaagacacgggaaagatttataatttataataaaaaggtttaaatgaacttc 379  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  42220469 atatataacacttgttttaacactcacgcaagacacagaaaagatttataatttataataaaaaggtttaaatgaacttc 42220548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 34652005 - 34651919
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  34652005 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 34651919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 41002203 - 41002117
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||  ||||  ||||| ||||||||||||||||||    
T  41002203 atcataagtattagtttatcattatctaaaaaactgttctttcaaaaaatgtgaattttttgtctattattctatatatttccaacc 41002117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 7667117 - 7667030
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||  |||  |||||  | ||||||||||||||||||||||    
T  7667117 atcataagtattagtttatcattctctaaaaaattattctttcaaaaaatgtgaatttttttgtccatttttctatatatttccaacc 7667030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 28437494 - 28437407
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||  |||  |||||  | ||||||||||||||||||||||    
T  28437494 atcataaatattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaatttttttgtccatttttctatatatttccaacc 28437407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33113591 - 33113504
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||  |||  |||||  | ||||||||||||||||||||||    
T  33113591 atcataagtattagtttatcattctctgaaaaattgttctttcaaaaaatgtgaatttttttgtcgatttttctatatatttccaacc 33113504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 44720210 - 44720297
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||||||  ||| |||||  | |||||||||||||||| ||||||    
T  44720210 atcataagtattagtttatcattctctacaaaactgttctttcaaaaaatgtgaatattttgtccatttttctatatattttcaacct 44720297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 38235923 - 38236006
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttcca 84  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||||  |||  ||||  | |||||||||||||||||||    
T  38235923 atcataagtattagtttatcattctctaaaaagctgttctttcaaaaaatgtgaattttttgtccatttttctatatatttcca 38236006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33810164 - 33810078
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||  ||||  | |||||||||| ||||| |||||    
T  33810164 atcataaatattagtttatcattctctaaaaaattattctttcaaaaaatatgaattttttatccatttttctatgtattttcaacc 33810078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 43188986 - 43189072
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  ||   ||||    ||||||||||||||||||||||    
T  43188986 atcataagtattagtttatcattttctaaaaaactgttctttcaaaaaatgtgatttttttgttcatttttctatatatttccaacc 43189072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 18789026 - 18789106
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaa-atttttcctatttttctatatattt 81  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||||||  ||| |||||| | ||||||||||||||||    
T  18789026 atcataagaattagtttatctttctctaaaaaattgttctttcaaaaaatataaaagattttttc-atttttctatatattt 18789106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47275954 - 47275905
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  47275954 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaat 47275905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 42620304 - 42620220
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaa 85  Q
    ||||||||||||||||||||||| ||||||||| |||| ||| |||||||  |||  ||||  | ||||||||||||||||||||    
T  42620304 atcataagtattagtttatcattctctaaaaaactgttattttaaaaaatgtgaattttttgtccatttttctatatatttccaa 42620220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 5968005 - 5967918
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||||  |||  |||||  | |||||| |||||||||||||||    
T  5968005 atcataagtattagtttatcattctctaaaaaactgttcttttaaaaaatgtgaatttttttatccatttttttatatatttccaacc 5967918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 16568627 - 16568710
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttcca 84  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||| |||  |||   |||| |||||||||||||||||||||    
T  16568627 atcataagcattagtttatcattctctaaaaagtagttctttcaaagaatgcgaatgatttttctatttttctatatatttcca 16568710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16597035 - 16596952
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttcca 84  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||| |||  |||   |||| |||||||||||||||||||||    
T  16597035 atcataagcattagtttatcattctctaaaaagtagttctttcaaagaatgcgaatgatttttctatttttctatatatttcca 16596952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 23620746 - 23620660
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||  ||||||  |||  ||||  | |||||||||||||| |||||||    
T  23620746 atcataagtattagtttatcattctctaaaaaactgttctttagaaaaatgtgaattttttgtcaatttttctatatatatccaacc 23620660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 43665121 - 43665035
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||| |||||||||||| ||||||||| |||||||||||||||   |||  ||||  | |||||||||||||||| |||||    
T  43665121 atcataagtagtagtttatcattctctaaaaaaatgttctttcaaaaaaattgaattttttgtccatttttctatatattttcaacc 43665035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33406584 - 33406497
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||| ||||||||||||| ||||||||||| |||||| |||||||  |||  |||||  | |||||||||||||||| |||||    
T  33406584 atcataagtgttagtttatcattctctaaaaaattattcttttaaaaaatgtgaatttttttatccatttttctatatattttcaacc 33406497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 19644422 - 19644510
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt--cctatttttctatatatttccaacc 87  Q
    ||||||||||||| ||||| ||| |||||||||  |||||||||||||||  |||  |||||   | ||||||||||||||||||||||    
T  19644422 atcataagtattaatttataattctctaaaaaacggttctttcaaaaaatgtgaattttttttgtccatttttctatatatttccaacc 19644510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 39410321 - 39410244
Alignment:
Q  10 attagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||| ||||||||| |||||||||  |||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  39410321 attattttatcattttctaaaaaaccgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 39410244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43778527 - 43778479
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaa 49  Q
    ||||||| ||||||||||||||| || |||||| |||||||||||||||    
T  43778527 atcataaatattagtttatcattctcaaaaaaactgttctttcaaaaaa 43778479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 12863602 - 12863556
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||| |||| ||||||||||||| |||||||| |||||||||||||    
T  12863602 ataagcattaatttatcattatctgaaaaattggtctttcaaaaaat 12863556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 46611835 - 46611786
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||| | ||||||||| |  |||||||||||||    
T  46611835 atcataagtattagtttatcactctctaaaaaaattatctttcaaaaaat 46611786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36747425 - 36747476
Alignment:
Q  1 atcataagtattagtttatcattatct--aaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||| ||||| |||  |||||| ||||||||||||||||    
T  36747425 atcataagtattagtttttcattctctaaaaaaaactgttctttcaaaaaat 36747476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 42471561 - 42471601
Alignment:
Q  10 attagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    |||||||||||||| ||||||||||| || |||||||||||    
T  42471561 attagtttatcattctctaaaaaattattttttcaaaaaat 42471601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23163652 - 23163739
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||  |||||| ||||||||||||||||||    
T  23163652 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaatatgaattttttgtctatttatctatatatttccaacct 23163739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 49860965 - 49861051
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||  |||| || ||||||||||||||||||||||    
T  49860965 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaattttttgcccatttttctatatatttccaacc 49861051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 30121474 - 30121388
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||||||| |||  ||||  | ||||||||||||||||||||||    
T  30121474 atcataagtattagtttatcattctctaaaaaactgctctttcaaaaaatatgaattttttgtccatttttctatatatttccaacc 30121388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 41961929 - 41961843
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  41961929 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 41961843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 46017334 - 46017420
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||||||  |||  ||||  ||||||||||||||||||||||||    
T  46017334 atcataagttttattttatcattctctaaaaaattgttctttcaaaaaatgtgaattttttatctatttttctatatatttccaacc 46017420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 47714625 - 47714538
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    |||||||||||||| |||||||| ||||||||| ||||||||||||||||  |||  ||||  |||||||||||||||||| ||||||    
T  47714625 atcataagtattagcttatcattctctaaaaaaatgttctttcaaaaaatgtgaattttttgtctatttttctatatattttcaacct 47714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 43237419 - 43237505
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  43237419 atcataagtattagtttatcattctctaaaaaaccgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 43237505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 47789398 - 47789312
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  47789398 atcataagtattagtttatcattttctaaaaaactgttttttcaaaaaatttgaattttttgtccatttttctatatatttccaacc 47789312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 49682953 - 49682867
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||  |||  ||||    ||||||||||||||||||||||    
T  49682953 atcataagtattagtttatcattatctaaaaaaatgttttttcaaaaaatgtgaattttttgttcatttttctatatatttccaacc 49682867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 17642718 - 17642805
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    ||||||| ||||||||||||||| ||||||||| | |||||| |||||||  |||  ||||  |||||||||||||||||||||||||    
T  17642718 atcataaatattagtttatcattctctaaaaaactattctttaaaaaaatgtgaattttttatctatttttctatatatttccaacct 17642805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 43007474 - 43007390
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||||||  ||  ||||  | ||||||||||||||||||||||    
T  43007474 atcataagtattagtttatcattctctaaaaaactgttctttaaaaaaata--aattttttgtccatttttctatatatttccaacc 43007390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 47434246 - 47434151
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttc-ctatttttctatatatttccaacctgcaaaac 95  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||  |  || |||||  | ||||||||||||||||||||||| ||||||    
T  47434246 atcataagtattagtttatcattctctaaaaaaccgttctttcaaaaaaatgtgaattttttgtccatttttctatatatttccaacctccaaaac 47434151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3043080 - 3042994
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||| ||||||||  |||  ||||  | |||||| |||||||||||||||    
T  3043080 atcataagtattagtttatcattctctaaaaaactgttcttccaaaaaatgtgaattttttgtccatttttttatatatttccaacc 3042994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33982691 - 33982605
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||| |||||||||||||| ||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  33982691 atcacaagtattagtttattattctctaaaaaactgttctttcaaaaaatgtgaattttttatccatttttctatatatttccaacc 33982605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 38515366 - 38515452
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||| ||| |||||||||||||||||| |||||||| |||  ||||    |||||||||||||||| |||||    
T  38515366 atcataagtattagtttattattctctaaaaaattgttctttaaaaaaatatgaattttttgttcatttttctatatattttcaacc 38515452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 45555769 - 45555815
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  45555769 ataagtattagtttatcattctctaaaaaattgttctttcaaaaaat 45555815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 15499251 - 15499166
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaac 86  Q
    ||||||||||||| ||||||||| |||||||| ||  | |||||||||||  ||||  |||| |||||||||||||||||||||||    
T  15499251 atcataagtattattttatcattctctaaaaatttactatttcaaaaaatgtgaaagattttactatttttctatatatttccaac 15499166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 38526282 - 38526367
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaac 86  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||  |||  ||||  | |||||| ||||||||||||||    
T  38526282 atcataagtattagtttatcattgtctaaaaaactgttttttcaaaaaatgtgaattttttatccatttttttatatatttccaac 38526367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25428797 - 25428883
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttt-tcctatttttctatatatttccaacc 87  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||  |||  |||| |||| ||||||||||||||| |||||    
T  25428797 atcataagtattattttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttatcct-tttttctatatattttcaacc 25428883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 30131838 - 30131752
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| || ||||||||||||| | ||| |||||  | |||||||||||| |||||||||    
T  30131838 atcataagtattagtttatcattctctaaaaaactgctctttcaaaaaat-gtaaattttttgtccatttttctatatttttccaacc 30131752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7661165 - 7661215
Alignment:
Q  1 atcataagtattagtttatcattatct-aaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  7661165 atcataagtattagtttatcattctctaaaaaaattgttctttcaaaaaat 7661215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 34306726 - 34306812
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||| ||||||||||||||| | ||||||| |||| |||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  34306726 atcataaatattagtttatcattctataaaaaactgttatttcaaaaaatctgaattttttgtcaatttttctatatatttccaacc 34306812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 55445036 - 55445124
Alignment:
Q  1 atcataagtattagtttatcattatct-aaaaaattgttctttcaaaaaataggaaaatttttcct-atttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||| |||||| ||||| ||||||||||  |||  |||||  | ||||||||||||||||||||||    
T  55445036 atcataagtattagtttatcattctctaaaaaaactgttcattcaaaaaatgtgaatttttttgttcatttttctatatatttccaacc 55445124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2420788 - 2420875
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    ||||||||||||||||||||||| |||||||||  | | ||| |||||||  |||  ||||  | |||||||||||||||||||||||    
T  2420788 atcataagtattagtttatcattctctaaaaaaccgctgttttaaaaaatgtgaattttttgtccatttttctatatatttccaacct 2420875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 36796553 - 36796639
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaac 86  Q
    ||||||| ||||||||||||||| |||||| || ||||||||||||||||  |||  |||||  | |||||||||||||||| ||||    
T  36796553 atcataaatattagtttatcattctctaaataactgttctttcaaaaaatgtgaatttttttgtccatttttctatatattttcaac 36796639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38593081 - 38593130
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| |||||||||  ||||||| |||||||    
T  38593081 atcataagtattagtttatcattctctaaaaaaccgttctttaaaaaaat 38593130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4247246 - 4247326
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatattt 81  Q
    |||||||| |||| ||||||||| |||||||||||  ||||| |||||||| ||||  |||| | |||||||| |||||||    
T  4247246 atcataagcattaatttatcattctctaaaaaattactctttaaaaaaatatgaaagattttaccatttttctctatattt 4247326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46312372 - 46312324
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaa 49  Q
    ||||||| ||||||||||||||| ||||||||  |||||||||||||||    
T  46312372 atcataaatattagtttatcattctctaaaaatctgttctttcaaaaaa 46312324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 55439713 - 55439745
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  55439713 atcataagtattagtttatcattatctaaaaaa 55439745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31178199 - 31178150
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||| |||||||||||||||  |||||||| |||||||| |||||||    
T  31178199 atcataactattagtttatcattcactaaaaaactgttcttttaaaaaat 31178150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42583251 - 42583199
Alignment:
Q  1 atcataagtattagtttatcattatct--aaaaaattgttctttcaaaaaata 51  Q
    |||||||||| |||||||||||| |||  |||||| |||||||||||||||||    
T  42583251 atcataagtactagtttatcattctctaaaaaaaactgttctttcaaaaaata 42583199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 27055863 - 27055815
Alignment:
Q  3 cataagtattagtttatcattatct-aaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||| ||| |||||| |||| |||||||||||    
T  27055863 cataagtattagtttatcattctctaaaaaaactgttttttcaaaaaat 27055815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8990915 - 8990829
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||  | ||||||||||||||||||||||    
T  8990915 atcataagtattagtttatcattttctaaaaaactgttctttcaaaaaatatgaatattttgtccatttttctatatatttccaacc 8990829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 7184250 - 7184337
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | |||||||||||||||||||||||    
T  7184250 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacct 7184337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32243604 - 32243690
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaac 86  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||  |||||  | |||||||||||||||||||||    
T  32243604 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaatttttttgtccatttttctatatatttccaac 32243690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 40357586 - 40357685
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacctgcaaaactctc 99  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  |||||  | |||||||||||||||| |||||  ||||||||||    
T  40357586 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaatttttttgtccatttttctatatattttcaacccccaaaactctc 40357685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 14008281 - 14008195
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||  ||||  | ||||||||||||||||| ||||    
T  14008281 atcataagtattagtttatcattctctaaaagactgttctttcaaaaaatatgaattttttgtccatttttctatatatttcgaacc 14008195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 18018550 - 18018464
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||  |  || ||||  | |||||||||||||||| |||||    
T  18018550 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaaatgtgaatttttgtccatttttctatatattttcaacc 18018464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3038899 - 3038850
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3038899 atcataagtattagtttatcattttctaaaaaattgttctttcaaaaaat 3038850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44020468 - 44020517
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44020468 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaat 44020517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 18826178 - 18826094
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaa 85  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||    
T  18826178 atcataagtattagttcatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaa 18826094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 726077 - 726162
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcct-atttttctatatatttccaac 86  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||| ||  || |||||  | |||||||||||||||||||||    
T  726077 atcataagtattagtttatcattctctaaaaaattgttctttcagaaaa-agtgaattttttgttcatttttctatatatttccaac 726162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 10165542 - 10165628
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||| |||||||||||||||| ||||||||| |||||||| |||||||  |||  ||||  | ||||||||||||||||||||||    
T  10165542 atcatacgtattagtttatcattctctaaaaaactgttcttttaaaaaatgtgaattttttgtccatttttctatatatttccaacc 10165628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 25955786 - 25955700
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| |  |||  |||   | ||||||||||||||||||||||    
T  25955786 atcataagtattagtttatcattatctaaaaaactgttcttttaaaaattgtgaatttttcgtccatttttctatatatttccaacc 25955700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 36567230 - 36567144
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||||||  |||  ||||  | |||||||||||||||| |||||    
T  36567230 atcataagtattagtttatcattctctaaaaaatcgttctttaaaaaaatgtgaattttttgtccatttttctatatattttcaacc 36567144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38294017 - 38294066
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  38294017 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaat 38294066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 8555728 - 8555648
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatattt 81  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||||||||  |||  ||||  | ||||||||||||||||    
T  8555728 atcataaatattagtttatcattctctaaaaagttgttctttcaaaaaatgtgaattttttgtccatttttctatatattt 8555648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8410882 - 8410795
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaa-ttgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||| ||||||||| |||||||||  ||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  8410882 atcataagtattaatttatcattctctaaaaaacctgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 8410795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 31550214 - 31550127
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||| ||||||||||||||| ||||||||| | ||||||||||||||  |||  |||||  | ||||||||||||||||||||||    
T  31550214 atcataactattagtttatcattctctaaaaaactattctttcaaaaaatgtgaatttttttgtccatttttctatatatttccaacc 31550127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 38023399 - 38023312
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||||||||  |||  |||||  | |||||||||||||||| |||||    
T  38023399 atcataagaattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaatttttttgtccatttttctatatattttcaacc 38023312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 4042093 - 4042179
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||| |||| |||||||  |||  ||||  | |||||||||||||||| |||||    
T  4042093 atcataagtattagtttatcattctctaaaaaactgtactttaaaaaaatgtgaactttttgtccatttttctatatattttcaacc 4042179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30312379 - 30312333
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaa 47  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  30312379 atcataagtattagtttatcattctctaaaaaactgttctttcaaaa 30312333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13765891 - 13765842
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  13765891 atcataagtattagtttatcattctctaaaaaactgttccttcaaaaaat 13765842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 31899308 - 31899222
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||| ||||||||||||| | ||||||||| |||||||||||||| |  |||  ||||    ||||||||||||||||||||||    
T  31899308 atcataactattagtttatcagtctctaaaaaactgttctttcaaaaattgtgaattttttgttcatttttctatatatttccaacc 31899222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 18780513 - 18780596
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttcca 84  Q
    ||||||| |||||||||||| || |||||| || ||||||||||||||||  |||  ||||  | |||||| ||||||||||||    
T  18780513 atcataaatattagtttatcgttctctaaataactgttctttcaaaaaatgtgaattttttgtccatttttttatatatttcca 18780596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29880893 - 29880940
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaa 48  Q
    |||||||| ||| |||||||||| |||||||||||| |||||||||||    
T  29880893 atcataagcattcgtttatcattctctaaaaaattgctctttcaaaaa 29880940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 30265311 - 30265224
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttc-tatatatttccaacc 87  Q
    |||||||| |||| ||||| ||| |||||||||||  ||||||||||||||  |||  |||| ||||||||| | |||||||||||||    
T  30265311 atcataagcattaatttattattctctaaaaaattactctttcaaaaaatataaaagattttactatttttcatttatatttccaacc 30265224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 14363454 - 14363416
Alignment:
Q  10 attagtttatcattatctaaaaaattgttctttcaaaaa 48  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  14363454 attagtttatcattttctaaaaaattgttcttttaaaaa 14363416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28554366 - 28554447
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttc 82  Q
    |||||||  |||||||||| ||| ||||||| |||| ||||| ||||||||  |||  ||| || |||||||||||||||||    
T  28554366 atcataaacattagtttatgattctctaaaagattgctctttaaaaaaatataaaagatttccccatttttctatatatttc 28554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 26574347 - 26574261
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||  ||||  ||||||||| ||||||||||||||    
T  26574347 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaattttttgtctatttttcaatatatttccaacc 26574261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 24735009 - 24735097
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt--cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  ||||||||||   | ||||||||||||||||||||||    
T  24735009 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaaaattttttgtccatttttctatatatttccaacc 24735097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 5825461 - 5825547
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | |||||||||||||||| |||||    
T  5825461 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatattttcaacc 5825547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 26481083 - 26480997
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  26481083 atcataagtattagtttatcattctctaaaaaactgttttttcaaaaaatgtgaattttttatcaatttttctatatatttccaacc 26480997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 23095080 - 23094996
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaa 85  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||   |||  ||||  | ||||||||||||||||||||    
T  23095080 atcataagtattattttatcattctctaaaaaattgttctttcaaaaaaagtgaattttttgtccatttttctatatatttccaa 23094996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34914756 - 34914836
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatattt 81  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||| |||  ||||  | ||||||||||||||||    
T  34914756 atcataagtattagtttatcattctctaaaaaactgttttttcaaaaaatatgaattttttgtccatttttctatatattt 34914836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 29241785 - 29241699
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||||  |||  ||||  | ||||||||| ||||||||||||    
T  29241785 atcataagtattagtttatcattctctaaaaatctgttctttcaaaaaatgtgaattttttgtccatttttctacatatttccaacc 29241699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 4909830 - 4909751
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcct-atttttctatatatttc 82  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||  |||  |||||  | |||||||||||||||||    
T  4909830 ataagcattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaatttttttgttcatttttctatatatttc 4909751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1029422 - 1029507
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||| |||||||||||||||||| |||||| | ||||||||| |||||||  |||  ||||  ||||||||||||||||||||||||    
T  1029422 atcacaagtattagtttatcattctctaaata-ttgttctttaaaaaaatgtgaattttttatctatttttctatatatttccaacc 1029507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 31345319 - 31345235
Alignment:
Q  4 ataagtat-tagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||||| | ||| |||||  | ||||||||||||||||||||||    
T  31345319 ataagtatatagtttatcattttctaaaaaatggttctttcaaaaaat-gtaaattttttgtccatttttctatatatttccaacc 31345235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33212449 - 33212497
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaa 49  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  33212449 atcataagtattagtttatcactatctaaaaaattaatctttcaaaaaa 33212497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16329508 - 16329557
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||| || |||| ||||||||| ||||||||||| ||||||||||||||    
T  16329508 atcattagcattaatttatcattctctaaaaaattattctttcaaaaaat 16329557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4648939 - 4648853
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  4648939 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 4648853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 1658309 - 1658439
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacctgcaaaactctctctt 103  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||  ||| |||||  | ||||||||||||||||||||||  |||||| ||| | |    
T  1658309 ataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaatattttgtccatttttctatatatttccaacccccaaaaccctcccct 1658408  T
Q  104 tctctccccccttcaaacactcaaacaaagcct 136  Q
     |  |  ||||||||||| ||||||||||||||    
T  1658409 ccctt--ccccttcaaactctcaaacaaagcct 1658439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 35701532 - 35701618
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  35701532 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 35701618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 25027054 - 25027137
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  25027054 ataagtattagtttatcattctctaaaaaattattctttcaaaaaatgtgaattttttgtcaatttttctatatatttccaacc 25027137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 17093026 - 17093112
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  17093026 atcataagtataagtttatcattctctaaaaagttgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 17093112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 33718310 - 33718396
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||||  |||  ||||  | ||||||||||||||||||||||    
T  33718310 atcataagtattagtttatcattctctaaaaaactgttcttttaaaaaatttgaattttttgtccatttttctatatatttccaacc 33718396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 25598721 - 25598635
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||||||| |||||||| ||||||||| ||||||||||||||||  |||  ||||  | |||||||||||||||| |||||    
T  25598721 atcataagtattagcttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatattttcaacc 25598635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35868959 - 35869041
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttcc 83  Q
    ||||||||||||||||||||||| ||||||||| | ||||||||||||||  |||  ||||  | ||||||||||||||||||    
T  35868959 atcataagtattagtttatcattctctaaaaaactattctttcaaaaaatgtgaattttttgtccatttttctatatatttcc 35869041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 38302310 - 38302261
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  38302310 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaat 38302261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27480124 - 27480077
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaa 48  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27480124 atcatatgtattagtttatcattctctaaaaaattgttctttcaaaaa 27480077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41638498 - 41638584
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||| ||||||||||||||| | ||||||| |||||||| |||||||  |||  ||||  | ||||||||||||||||||||||    
T  41638498 atcataactattagtttatcattctttaaaaaactgttctttaaaaaaatgtgaattttttgtccatttttctatatatttccaacc 41638584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 10295617 - 10295701
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    |||||||||||||||||||| |||| |||| | ||||||||||||||  |||  |||||  |||||||||||||||||| |||||    
T  10295617 ataagtattagtttatcattctctacaaaactattctttcaaaaaatgtgaatttttttgtctatttttctatatattttcaacc 10295701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 26149732 - 26149819
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||| ||||||||||||||| ||||||||| |  |||||||||||||  |||  |||||  | ||||||||||||||||||||||    
T  26149732 atcataaatattagtttatcattctctaaaaaactaatctttcaaaaaatgtgaatttttttgtccatttttctatatatttccaacc 26149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32760885 - 32760972
Alignment:
Q  1 atcataagtattagtttatcattatct--aaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaac 86  Q
    ||||||||||||||||||||||| |||  |||||| | ||||||||||||||  |||  ||||  | | |||||||||||||||||||    
T  32760885 atcataagtattagtttatcattctctaaaaaaaaatattctttcaaaaaatgtgaattttttgtccaattttctatatatttccaac 32760972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 2021109 - 2021196
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttt-tcctatttttctatatatttccaacc 87  Q
    ||||||| ||||| ||||||||| ||||||||| |||||||||||| |||| |||  |||| ||   ||||| |||||||||||||||    
T  2021109 atcataaatattaatttatcattctctaaaaaactgttctttcaaacaatatgaattttttatcaattttttttatatatttccaacc 2021196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 9684743 - 9684657
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||| |||| ||||||||| |||||||||||  |||||||||||||  | ||  |||||| ||||| |  |||||||||||||    
T  9684743 atcataagcattaatttatcattttctaaaaaattactctttcaaaaaatgtggaagattttcccattttcccctatatttccaacc 9684657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11017730 - 11017816
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  ||||||||||||||||||||||||    
T  11017730 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtctatttttctatatatttccaacc 11017816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 23871415 - 23871329
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  ||| |||||  | ||||||||||||||||||||||    
T  23871415 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaatattttatccatttttctatatatttccaacc 23871329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 12293944 - 12294027
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||  |||| ||||  | ||||||||||||||||||||||    
T  12293944 ataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaaatttttgtccatttttctatatatttccaacc 12294027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13255473 - 13255559
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||  | ||||||||||||||||||||||    
T  13255473 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaat-gtaaattttttgtccatttttctatatatttccaacc 13255559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 2925887 - 2925800
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||||  |||  ||||  | |||||||||||||||||||||||    
T  2925887 atcataagtattattttatcattttctaaaaaattgttttttcaaaaaatgtgaattttttgtccatttttctatatatttccaacct 2925800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 33991670 - 33991757
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  |||||  | ||||||||||||||||||||||    
T  33991670 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaatttttttgtccatttttctatatatttccaacc 33991757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 15463940 - 15464026
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  15463940 atcataagtattagtttatcattctctaaaaaaacgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 15464026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 27500113 - 27500199
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||||||||||||||||  |||||||| ||||||||||||||||  |||  |||||   ||||||||||||||||||||||    
T  27500113 atcataagtattagtttatcattcactaaaaaactgttctttcaaaaaatgtgaatttttttgtcatttttctatatatttccaacc 27500199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 39889610 - 39889524
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  39889610 atcataagtattagtttatcattctctaaaaaaccgttctttcaaaaaatgtgaattttttgtcaatttttctatatatttccaacc 39889524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 45565259 - 45565344
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||||| | ||| ||||  | ||||||||||||||||||||||    
T  45565259 atcataagtataagtttatcattctctaaaaaactgttctttcaaaaaat-gtaaatttttgtccatttttctatatatttccaacc 45565344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 7965569 - 7965656
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttc-ctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||  |  || |||||  ||||||||||||||||||||||||    
T  7965569 atcataagtattagtttatcattctctaaaaatctgttctttcaaaaaaatgtgaattttttatctatttttctatatatttccaacc 7965656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32300184 - 32300271
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||||  |||  ||||  | ||||||||| |||||||||||||    
T  32300184 atcataagtattagtttatcattttctaaaaaactgttcttttaaaaaatgtgaattttttgtccatttttctacatatttccaacct 32300271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 42488579 - 42488492
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttc-ctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||  |  || |||||  | ||||||||||||||||||||||    
T  42488579 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaaatgtgaattttttgtccatttttctatatatttccaacc 42488492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1688169 - 1688083
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||||||||  |||  ||||    ||||||||||||||||||||||    
T  1688169 atcataagtattagtttatcattctctaaaagactgttctttcaaaaaatgtgaattttttgttcatttttctatatatttccaacc 1688083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 42162005 - 42161919
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||||  |||  | ||  |||||||| |||||||||||||||    
T  42162005 atcataaatattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaatttattgtctatttttttatatatttccaacc 42161919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 47905641 - 47905555
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||| ||||||||||||||||| ||||||||| |||||||| |||||||  |||  ||||  | ||||||||||||||||||||||    
T  47905641 atcattagtattagtttatcattctctaaaaaactgttcttttaaaaaatgtgaattttttgtccatttttctatatatttccaacc 47905555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 8156291 - 8156211
Alignment:
Q  8 gtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    |||||||||||||||| ||||||||||||||||||||||||||  |||  |||||  | |||||||||||||||| |||||    
T  8156291 gtattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaatttttttgtccatttttctatatattttcaacc 8156211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 13061349 - 13061262
Alignment:
Q  1 atcataagtattagtttatcattatct-aaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||||||||  |||  ||||  | |||| |||||||||||||||||    
T  13061349 atcataagtattagtttatcattttctaaaaaaactgttctttcaaaaaatgtgaattttttgtccatttctctatatatttccaacc 13061262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17675325 - 17675372
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaa 48  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  17675325 atcataaatattagtttatcattctctaaaaaattgttctttcaaaaa 17675372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32299231 - 32299318
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    ||||||||||||||||||||||| |||||||||  ||||||| |||||||  |||  ||||  | ||||||||| |||||||||||||    
T  32299231 atcataagtattagtttatcattttctaaaaaacagttcttttaaaaaatgtgaattttttgtccatttttctacatatttccaacct 32299318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 50247725 - 50247811
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaa-aatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| | |||||| |||||||  |||  |||| ||| ||||||||||||||||||||||    
T  50247725 atcataagtattagtttatcattctctaaaaaactattcttttaaaaaatgtgaattatttgtcc-atttttctatatatttccaacc 50247811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1523724 - 1523810
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| | |||||| ||||||||| |||||||  |||  ||||  | ||||||| ||||||||||||||    
T  1523724 atcataagtattagtttatcattctttaaaaatttgttctttaaaaaaatgtgaattttttgtccatttttcaatatatttccaacc 1523810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 26940708 - 26940794
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||||||| | |||||  |||  ||||    ||||||||||||||||||||||    
T  26940708 atcataagtattagtttatcattttctaaaaaactgttcttttacaaaatgtgaattttttgttcatttttctatatatttccaacc 26940794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 47206376 - 47206290
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||||| |||||| ||| ||||||||  ||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  47206376 atcataagtatttgtttataattctctaaaaagctgttctttcaaaaaatgtgaattttttatcaatttttctatatatttccaacc 47206290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9173701 - 9173652
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    |||||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  9173701 atcataagcattagtttatcattatctaaaaatttgttctttaaaaaaat 9173652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30543315 - 30543266
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  30543315 atcataagtattaatttatcattctctaaaaaattattctttcaaaaaat 30543266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 38795103 - 38795180
Alignment:
Q  10 attagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||||||| ||||||||| ||||||||||||||||  ||   ||||  | ||||||||||||||||||||||    
T  38795103 attagtttatcattctctaaaaaactgttctttcaaaaaatgtgatttttttgtcaatttttctatatatttccaacc 38795180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 50402870 - 50402955
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaa 85  Q
    ||||||||||||||||||||||| || |||||| |||||||| |||||||  |||  |||||  | ||||||||||||||||||||    
T  50402870 atcataagtattagtttatcattctcaaaaaaactgttctttaaaaaaatgtgaatttttttgtccatttttctatatatttccaa 50402955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 36668601 - 36668541
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttt 61  Q
    |||||||| |||||||||||||| || | |||||||||||||||||||||  |||||||||    
T  36668601 atcataagcattagtttatcattttcaataaaattgttctttcaaaaaatgtgaaaatttt 36668541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 896444 - 896362
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||| |||| | ||||||  ||||||||||||||||  |||  ||| ||| ||||||||||||||||||||||    
T  896444 ataagtattagtttaccattctttaaaaatctgttctttcaaaaaatgtgaatttttgtcc-atttttctatatatttccaacc 896362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 28773333 - 28773257
Alignment:
Q  10 attagtttatcattatctaaaaaattgttctttcaaaaaatagg---aaaatttttcctatttttctatatatttcca 84  Q
    |||||||||||||| ||||||||||||||||||| ||||||  |   || |||||||| |||||||||||||||||||    
T  28773333 attagtttatcattctctaaaaaattgttctttcgaaaaatgtggataagatttttcc-atttttctatatatttcca 28773257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 50476660 - 50476738
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaa-atttttcctatttttctatatatttc 82  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||  |||| |||| ||| |||| ||||||||||||    
T  50476660 ataagcattagtttatcattatcttaaaaattgctctttcaaaaaatgtgaaagatttctcc-atttctctatatatttc 50476738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2175463 - 2175513
Alignment:
Q  1 atcataagtattagtttatcattatct-aaaaaattgttctttcaaaaaat 50  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  2175463 atcataaatattagtttatcattctctaaaaaaattgttctttcaaaaaat 2175513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14153240 - 14153290
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaata 51  Q
    ||||||| ||||||||||||||| |||||||  ||||||||||||||||||    
T  14153240 atcataaatattagtttatcattctctaaaattttgttctttcaaaaaata 14153290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 28748319 - 28748401
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttcc 83  Q
    ||||||||||||||||||||||| |  |||||||| |||||||| |||||| ||||  |||  | |||||||| |||||||||    
T  28748319 atcataagtattagtttatcattcttcaaaaaattattctttcataaaatacgaaagatttctcaatttttctgtatatttcc 28748401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 51246526 - 51246440
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcct--atttttctatatatttccaacc 87  Q
    |||||||  |||||||||||||| ||||||||| ||||||||||||||||  | ||||||||  |  |||||| |||||||||||||||    
T  51246526 atcataaagattagtttatcattctctaaaaaactgttctttcaaaaaat--gtaaattttttatgcatttttttatatatttccaacc 51246440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 938200 - 938112
Alignment:
Q  1 atcataagtatta-gtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    ||||||| ||||| |||||||||| |||| ||||||||||||| |||||||| |||  ||||  | ||| |||||||||||||| ||||    
T  938200 atcataaatattaagtttatcattctctacaaaattgttcttttaaaaaatatgaattttttatccattcttctatatatttcccacct 938112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 7401516 - 7401432
Alignment:
Q  3 cataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||| |||||||||| ||| ||||||||| |||| |||||||||||  |||  ||||  | ||||||||||||||||| ||||    
T  7401516 cataagcattagtttattattctctaaaaaactgttttttcaaaaaatgtgaattttttatccatttttctatatatttctaacc 7401432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 269 - 356
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||  |||||  | ||||||||||||||||||||||    
T  269 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaatttttttgtccatttttctatatatttccaacc 356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 2324 - 2237
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||  |||||  | ||||||||||||||||||||||    
T  2324 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaatttttttgtccatttttctatatatttccaacc 2237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3404526 - 3404439
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  |||||  ||||||||||||||||||||||||    
T  3404526 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaatttttttatctatttttctatatatttccaacc 3404439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 34272644 - 34272730
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||  |||  |||| || ||||||||||||||||||||||    
T  34272644 atcataagtattagtttatcattttctaaaaaactgttttttcaaaaaatttgaattttttgcccatttttctatatatttccaacc 34272730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 37659483 - 37659397
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||| |  |||  |||| |||||||||||||||||||||||||    
T  37659483 atcataagtattagtttatcattctctaaaaaactgttatttcaaaaattgtgaactttttgcctatttttctatatatttccaacc 37659397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4734448 - 4734362
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | |||||||| |||||||||||||    
T  4734448 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctctatatttccaacc 4734362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25033509 - 25033590
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttc 82  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||  |||  ||||  | |||||||||||||||||    
T  25033509 atcataagtattagtttatcattatctaaaaaactgttctttgaaaaaatgtgaattttttgtccatttttctatatatttc 25033590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 33230999 - 33230913
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttt-tcctatttttctatatatttccaac 86  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  |||| |||  ||||| ||||||||||||||    
T  33230999 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttatccattttttttatatatttccaac 33230913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 2474717 - 2474633
Alignment:
Q  3 cataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||| | ||| |||||  | |||||||||||||||| |||||    
T  2474717 cataagtattagtttatcattatctaaaaaactgttttttcaaaaaat-gcaaattttttatccatttttctatatattttcaacc 2474633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 15108216 - 15108135
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaa-atttttcctatttttctatatatttcc 83  Q
    ||||||||| ||| ||||||||| ||||||||||| ||||||||||||||| |||| ||||||  |||||| ||||||||||||    
T  15108216 atcataagtgttaatttatcattctctaaaaaattattctttcaaaaaatatgaaagattttt--tattttcctatatatttcc 15108135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 13865044 - 13864958
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||  |||  ||||    |||| |||||||||||||||||    
T  13865044 atcataagtattaatttatcattttctaaaaaactgttctttcaaaaaatgtgaattttttattcatttatctatatatttccaacc 13864958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 36102842 - 36102756
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||| ||| |||||||  |||  ||||  | |||||||||||||||| |||||    
T  36102842 atcataagtattagtttatcattctctaaaaaactgttttttaaaaaaatgtgaattttttgtccatttttctatatattttcaacc 36102756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 6839747 - 6839664
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacct 88  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||| || ||||  |||  ||||||||||| |||||||| ||||    
T  6839747 ataagtattagtttatcattctct-aaaaattgttctttcgaaaagtatgaaagatttctctatttttctacatatttcccacct 6839664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34349844 - 34349892
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaa 49  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  34349844 atcataagtattagtttatcattctctaaaaaactgttcttttaaaaaa 34349892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 43733060 - 43733017
Alignment:
Q  7 agtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    |||||||||||||||||||||||||||||| |||| ||||||||    
T  43733060 agtattagtttatcattatctaaaaaattgctcttccaaaaaat 43733017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 36906316 - 36906405
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt--cctatttttctatatatttccaacct 88  Q
    ||||||||||||||||||||||| ||| |||||  |||||||||||||||  ||   |||||   | |||||||||||||||||||||||    
T  36906316 atcataagtattagtttatcattctctgaaaaaccgttctttcaaaaaatgtgatttttttttgtccatttttctatatatttccaacct 36906405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 7317 - 7362
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaa 49  Q
    |||||||||||||||||||| |||||| || |||||||||||||||    
T  7317 ataagtattagtttatcattctctaaataactgttctttcaaaaaa 7362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 1941994 - 1941916
Alignment:
Q  9 tattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||  |||  ||||  | ||||||||||| ||||| ||||    
T  1941994 tattagtttatcattctctaaaaaactgttctttcaacaaatgtgaattttttgtccatttttctataaatttcaaacc 1941916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34148531 - 34148483
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||| ||||||||||||| ||||||||| | ||||||||||||||    
T  34148531 atcataagt-ttagtttatcattctctaaaaaactattctttcaaaaaat 34148483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8520 - 8606
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||  ||||  | |||||| |||||||||||||||    
T  8520 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaattttttgtccatttttgtatatatttccaacc 8606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 35407 - 35321
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  35407 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 35321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13270112 - 13270198
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||||| |||  ||||  | ||||||||||||||||||||||    
T  13270112 atcataagtattagtttatcattctctaaaaaactgttctttaaaaaaatatgaattttttgtccatttttctatatatttccaacc 13270198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 17873325 - 17873411
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||| |||  ||||    ||||||||||||||||||||||    
T  17873325 atcataagtattagtttatcattctctaaaaaattgttctttaaaaaaatatgaattttttgtgcatttttctatatatttccaacc 17873411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38317180 - 38317096
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaa 85  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||    
T  38317180 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaa 38317096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3126964 - 3126878
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||  ||||  | |||||| ||||||||| |||||    
T  3126964 atcataagtattagtttatcattatctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttgtatatattttcaacc 3126878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 32060775 - 32060861
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||| ||||||||| ||||||||| |||| |||||||||||  |||  ||||  ||||||||||||||||||||||||    
T  32060775 atcataagtattaatttatcattctctaaaaaactgttttttcaaaaaatgtgaattttttgtctatttttctatatatttccaacc 32060861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 32648956 - 32648870
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  32648956 atcataagtattagtttatcattctctaaaaaactgctctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 32648870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41844564 - 41844650
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||  |||  ||||  | |||||||||||| |||||||||    
T  41844564 atcataagtattaatttatcattctctaaaaaattgttctttcaaaaaatgtgaattttttgtccatttttctatatgtttccaacc 41844650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23708265 - 23708314
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23708265 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaat 23708314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 24280040 - 24280124
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaa 85  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||    
T  24280040 atcataagaattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaa 24280124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 24291514 - 24291598
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaa 85  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||||  |||  ||||  | ||||||||||||||||||||    
T  24291514 atcataagtattagtttatcattctctaaaaagctgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaa 24291598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 50642953 - 50643033
Alignment:
Q  6 aagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaac 86  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  |||||||| ||||||||||||||    
T  50642953 aagtattagtttatcattttctaaaaaactgttctttcaaaaaatgtgaattttttgtctatttttttatatatttccaac 50643033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 904326 - 904412
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaa-aatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| | ||||||||||||||  |||  |||| ||| ||||||||||||||||||||||    
T  904326 atcataagtattagtttatcattctctaaaaaactattctttcaaaaaatgtgaattatttgtcc-atttttctatatatttccaacc 904412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 20534056 - 20534143
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||  |||  |||||  | ||||||||||||||||||||||    
T  20534056 atcataagtattagtttatcattctctaaaaaacggttctttcaaaaaatgtgaatttttttgtccatttttctatatatttccaacc 20534143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 17622417 - 17622339
Alignment:
Q  9 tattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  17622417 tattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 17622339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 38366156 - 38366242
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||  |||| |||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  38366156 atcataagtattagtttatcattctctaaaaatctgttttttcaaaaaatgtgaattttttgtcaatttttctatatatttccaacc 38366242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 49404575 - 49404489
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||| |||||||||||| ||||||||| |||| |||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  49404575 atcataagtaatagtttatcattctctaaaaaactgttttttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 49404489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 16535823 - 16535904
Alignment:
Q  4 ataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaa 85  Q
    |||||||||||||||||||| |||||||||| | |||||||||||||  |||  ||||  | ||||||||||||||||||||    
T  16535823 ataagtattagtttatcattctctaaaaaatagctctttcaaaaaatgtgaattttttgtccatttttctatatatttccaa 16535904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 36151322 - 36151237
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaac 86  Q
    ||||||||||||||||||||||| ||||||||| | ||||||||||||||  |||  ||||  | |||||||||||||||| ||||    
T  36151322 atcataagtattagtttatcattttctaaaaaactattctttcaaaaaatgtgaattttttgtccatttttctatatattttcaac 36151237  T

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Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 48830766 - 48830717
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  48830766 atcataagtattagtttatcattctctaaaaaactgttctttcaaaaaat 48830717  T

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Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 21730279 - 21730192
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcct--atttttctatatatttccaac 86  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||| ||  || |||||  |  |||||||||||||||||||||    
T  21730279 atcataagtattagtttatcattctctaaaaaactgttcttttaaaaaaaagtgaatttttttattcatttttctatatatttccaac 21730192  T

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Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41363764 - 41363684
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatattt 81  Q
    ||||||||||||||||||||||| | ||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||    
T  41363764 atcataagtattagtttatcattctgtaaaaaactgttctttcaaaaaatgtgaattttttatcaatttttctatatattt 41363684  T

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Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 21296062 - 21295983
Alignment:
Q  9 tattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcct--atttttctatatatttccaacct 88  Q
    ||||||||||||||| |||||||||| ||||||||||||||| | |||||||||  |  |||||||||||||||||||||||    
T  21296062 tattagtttatcattctctaaaaaat-gttctttcaaaaaat-gtaaaattttttatccatttttctatatatttccaacct 21295983  T

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Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 37756675 - 37756589
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||||   |||  ||||  | |||||| |||||||||||||||    
T  37756675 atcataagtattagtttatcattctctaaagaactgttctttcaaaaaaattgaattttttgtccatttttgtatatatttccaacc 37756589  T

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Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 52594578 - 52594528
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaata 51  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  52594578 atcataagtattagtttatcattctctaagaaactgttctttcaaaaaata 52594528  T

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Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 47669939 - 47669988
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaat 50  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||||||    
T  47669939 atcataagtattagtttatcattctctaaaaatttattctttcaaaaaat 47669988  T

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Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7182143 - 7182063
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatattt 81  Q
    ||||||||||||||||||||||| |||||||||   ||||||||||||||  |||  ||||  | ||||||||||||||||    
T  7182143 atcataagtattagtttatcattctctaaaaaaccattctttcaaaaaatgtgaattttttgtccatttttctatatattt 7182063  T

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Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 32948479 - 32948342
Alignment:
Q  1 atcataagtattagtttat-cattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaa-cctgcaaaactct 98  Q
    |||||||||||||| |||| |||| ||||||||| ||||||||||||||||  |||  ||||  | |||||||||||||||| ||| ||  |||||||||    
T  32948479 atcataagtattagattattcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatattttcaaccccccaaaactct 32948380  T
Q  99 ctctttctctccccccttcaaacactcaaacaaagcctaa 138  Q
    ||| | |  |  ||||| |||||||||||||||| |||||    
T  32948379 ctcctccctt--cccctccaaacactcaaacaaaacctaa 32948342  T

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Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 22558906 - 22558991
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||||||||||||| || | ||| ||| |||||||| |||||||| |||  ||||  | ||||||||||||||||||||||    
T  22558906 atcataagtattagtttatcgttctttaagaaactgttcttt-aaaaaatatgaattttttatccatttttctatatatttccaacc 22558991  T

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Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31530148 - 31530193
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaa 46  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  31530148 atcataagtattaatttatcattctctaaaaaactgttctttcaaa 31530193  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 15451289 - 15451203
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||| |||| ||||||||||| |||||||||  |||||||||||||  ||||  |||| | |||||||  |||||||| ||||    
T  15451289 atcataagcattaatttatcattatttaaaaaattactctttcaaaaaatgtgaaagattttaccatttttcactatatttctaacc 15451203  T

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Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24662699 - 24662613
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||| |||  ||||||||| |||||||||||  ||||||| |||||  ||||  |||| | ||||| ||||||||||||||||    
T  24662699 atcataagcattgatttatcattctctaaaaaattactctttcagaaaatgtgaaagattttaccattttcctatatatttccaacc 24662613  T

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Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 50640256 - 50640333
Alignment:
Q  10 attagtttatcattatctaaaaaattgttctttcaaaaaat-aggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||| ||||||||| ||| ||||||||||||||| |||||| || || |||||| | ||||||||| ||||||||||||    
T  50640256 attaatttatcattctcttaaaaattgttctttcgaaaaatgagaaagattttttc-atttttctacatatttccaacc 50640333  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53013716 - 53013764
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaa 49  Q
    |||||||  |||| ||||||||| |||||||||||||| ||||||||||    
T  53013716 atcataaacattaatttatcattctctaaaaaattgttttttcaaaaaa 53013764  T

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Target: scaffold0717 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1707 - 1794
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttt--tcctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||  ||||  |||| |||||||||||||||||||||    
T  1707 atcataagtattagtttatcattctctaaaaaattgttctttcaaaaaatgtgaatttttttgtcct-tttttctatatatttccaacc 1794  T

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Target: scaffold0059 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 67901 - 67982
Alignment:
Q  6 aagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  67901 aagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 67982  T

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Target: scaffold0059; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 76006 - 76087
Alignment:
Q  6 aagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  76006 aagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 76087  T

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Target: scaffold0013 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 107756 - 107675
Alignment:
Q  6 aagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttccaacc 87  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||  |||  ||||  | ||||||||||||||||||||||    
T  107756 aagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaattttttgtccatttttctatatatttccaacc 107675  T

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Target: scaffold0952 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3622 - 3535
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaattttt-cctatttttctatatatttccaacc 87  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||  |||  |||||  | ||||||||||||||| ||||||    
T  3622 atcataagtattagtttatcattctctaaaaaactgttatttcaaaaaatgtgaatttttttgtccatttttctatatattgccaacc 3535  T

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Target: scaffold0078 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4406 - 4489
Alignment:
Q  1 atcataagtattagtttatcattatctaaaaaattgttctttcaaaaaataggaaaatttttcctatttttctatatatttcca 84  Q
    |||||||| |||| ||||||||| |||||||| | ||||||||||| |||  |||   |||| |||||||||||||||||||||    
T  4406 atcataagcattaatttatcattctctaaaaagtggttctttcaaagaatgtgaatgatttttctatttttctatatatttcca 4489  T

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