View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17468_high_17 (Length: 336)

Name: NF17468_high_17
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17468_high_17
NF17468_high_17
[»] chr4 (2 HSPs)
chr4 (11-300)||(52709771-52710060)
chr4 (12-143)||(6723359-6723490)
[»] chr3 (2 HSPs)
chr3 (11-299)||(50060617-50060916)
chr3 (12-67)||(1533367-1533422)
[»] chr7 (1 HSPs)
chr7 (33-299)||(3008394-3008671)
[»] chr2 (1 HSPs)
chr2 (32-299)||(41898285-41898563)
[»] chr1 (3 HSPs)
chr1 (11-150)||(52985855-52985994)
chr1 (11-299)||(2414490-2414789)
chr1 (11-150)||(27204207-27204346)
[»] scaffold0118 (2 HSPs)
scaffold0118 (26-147)||(18120-18241)
scaffold0118 (190-299)||(18296-18405)
[»] chr6 (1 HSPs)
chr6 (210-299)||(7813024-7813112)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 52710060 - 52709771
Alignment:
Q  11 caaaggttagttaacaaactgatatacctatcacatattaggtctgatgttgcttttgttgtaatcttagtcggtcaatttatgcaccaaccaaaggaga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52710060 caaaggttagttaacaaactgatatacctatcacatattaggtctgatgttgcttttgttgtaatcttagtcggtcaatttatgcaccaaccaaaggaga 52709961  T
Q  111 ttcatttacaagttgcactcagagttgttcaatatttgaatggaccccgatcttgtttgaatagaatggaatgtgggacttgaagcatatattgatattg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52709960 ttcatttacaagttgcactcagagttgttcaatatttgaatggaccccgatcttgtttgaatagaatggaatgtgggacttgaagcatatattgatattg 52709861  T
Q  211 actatgcaggatcagttgtggataggaaattgactacatgatattgcacttttctatgtgataatcttatgacttggaaaagtaaaaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52709860 actatgcaggatcagttgtggataggaaattgactacatgatattgcacttttctatgtgataatcttatgacttggaaaagtaaaaaat 52709771  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 6723359 - 6723490
Alignment:
Q  12 aaaggttagttaacaaactgatatacctatcacatattaggtctgatgttgcttttgttgtaatcttagtcggtcaatttatgcaccaaccaaaggagat 111  Q
    |||||||||| | ||| || |||| |||||||| || |||   |||| ||||||||| ||||| ||||||| | ||||| |||||||| |||||||||||    
T  6723359 aaaggttagtcagcaagcttatatgcctatcacttactagacttgattttgcttttgatgtaagcttagtcagccaattcatgcaccacccaaaggagat 6723458  T
Q  112 tcatttacaagttgcactcagagttgttcaat 143  Q
    ||| |||||||  |||||  || |||||||||    
T  6723459 tcacttacaagccgcacttcgaattgttcaat 6723490  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 50060617 - 50060916
Alignment:
Q  11 caaaggttagttaacaaactgatatacctatcacatattaggtctgatgttgcttttgttgtaatcttagtcggtcaatttatgcaccaaccaaaggaga 110  Q
    ||||||||||||  |||||| |||||| ||||||||| |||  |||||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||    
T  50060617 caaaggttagttggcaaacttatatacttatcacatactagacctgatgttgcatttgttgtaagcttagtcagccaattcatgcaccaaccaaaggaga 50060716  T
Q  111 ttcatttacaagttgcactcagagttgttcaatatttgaatggacccc----------gatcttgtttgaatagaatggaa-tgtgggacttgaagcata 199  Q
     ||| ||||||| ||||||| || |||||||||||||||| |||||||          ||| |||||||||   |||||||   || |||||||||||||    
T  50060717 ctcacttacaagctgcactccgaattgttcaatatttgaaaggacccccaggtaaagggatattgtttgaacgaaatggaagcatgagacttgaagcata 50060816  T
Q  200 tattgatattgactatgcaggatcagttgtggataggaaattgactacatgatattgcacttttctatgtgataatcttatgacttggaaaagtaaaaaa 299  Q
    || ||||  |||||||||||| | | |||||||||||| ||  |||||| | ||||||||||||||  ||| ||||||| |||||||||| |||||||||    
T  50060817 tactgatgctgactatgcagggttaattgtggataggagatcaactacaggctattgcacttttcttggtggtaatcttgtgacttggaagagtaaaaaa 50060916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 1533367 - 1533422
Alignment:
Q  12 aaaggttagttaacaaactgatatacctatcacatattaggtctgatgttgctttt 67  Q
    ||||||||||  | ||||| |||||||||||||||| ||| |||||||||||||||    
T  1533367 aaaggttagtcgaaaaacttatatacctatcacatactagatctgatgttgctttt 1533422  T

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Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 33 - 299
Target Start/End: Original strand, 3008394 - 3008671
Alignment:
Q  33 tatacctatcacatattaggtctgatgttgcttttgttgtaatcttagtcggtcaatttatgcaccaaccaaaggagattcatttacaagttgcactcag 132  Q
    |||||| |||||||| |||  ||||||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||||||||  |||||  |    
T  3008394 tataccgatcacatactagacctgatgttgcttttgttgtaagcttagtcagccaattcatgcaccaaccaaaggagattcatttacaagccgcacttcg 3008493  T
Q  133 agttgttcaatatttgaatggaccccgatcttg------tttg----aatagaatggaa-tgtgggacttgaagcatatattgatattgactatgcagga 221  Q
    | |||| ||||||| ||| ||| ||| || |||      ||||    ||  |||||||| ||||||| |||||||||| | |||| | |||||||||||     
T  3008494 aattgtgcaatattcgaaaggaaccccatgttgaggaattttgttcaaacggaatggaagtgtgggaattgaagcatacactgatgtggactatgcaggg 3008593  T
Q  222 tcagttgtggataggaaattgactacatgatattgcacttttctatgtgataatcttatgacttggaaaagtaaaaaa 299  Q
    |||  ||||||||| | |||||||| | |||||| |||||| ||| |||  |||||| ||||||||||||||||||||    
T  3008594 tcaaatgtggatagtatattgactataggatatttcactttcctaggtgggaatcttgtgacttggaaaagtaaaaaa 3008671  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 299
Target Start/End: Original strand, 41898285 - 41898563
Alignment:
Q  32 atatacctatcacatattaggtctgatgttgcttttgttgtaatcttagtcggtcaatttatgcaccaaccaaaggagattcatttacaagttgcactca 131  Q
    |||||||| ||||||| |||  ||||||||||||||| ||||| ||||||| | ||||| |||||||||||||||||||||||||||||||  |||||      
T  41898285 atatacctctcacatactagacctgatgttgcttttgctgtaaacttagtcagccaattcatgcaccaaccaaaggagattcatttacaagccgcacttc 41898384  T
Q  132 gagttgttcaatatttgaatggacccc----------gatcttgtttgaatagaatggaa-tgtgggacttgaagcatatattgatattgactatgcagg 220  Q
    || |||| ||||||||||| ||| |||           || || |  |||  |||||||| |||||||||||||||||  ||||||   |||||||||||    
T  41898385 gaattgtgcaatatttgaaaggaaccccaggtagaggaattttttacgaaaggaatggaagtgtgggacttgaagcatgcattgatgcggactatgcagg 41898484  T
Q  221 atcagttgtggataggaaattgactacatgatattgcacttttctatgtgataatcttatgacttggaaaagtaaaaaa 299  Q
     ||| |||||||||||| || ||||||| ||||||||||||| ||  |||  || ||| ||||||||||||||||||||    
T  41898485 gtcaattgtggataggagatcgactacaggatattgcactttcctgagtgggaaccttgtgacttggaaaagtaaaaaa 41898563  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 52985855 - 52985994
Alignment:
Q  11 caaaggttagttaacaaactgatatacctatcacatattaggtctgatgttgcttttgttgtaatcttagtcggtcaatttatgcaccaaccaaaggaga 110  Q
    |||||||||||  ||||||| |||||| ||||||||| |||   ||||||||| |||| ||||  ||||||| | ||||| |||||||||||||||||||    
T  52985855 caaaggttagtcgacaaacttatatacttatcacatactagacttgatgttgcctttgctgtaggcttagtcagccaattcatgcaccaaccaaaggaga 52985954  T
Q  111 ttcatttacaagttgcactcagagttgttcaatatttgaa 150  Q
    |||||||||||| |||||||  | || |||||||||||||    
T  52985955 ttcatttacaagctgcactccaaatttttcaatatttgaa 52985994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 2414490 - 2414789
Alignment:
Q  11 caaaggttagttaacaaactgatatacctatcacatattaggtctgatgttgcttttgttgtaatcttagtcggtcaatttatgcaccaaccaaaggaga 110  Q
    ||||||||||||  ||| || |||||||| ||||||| |||  ||||||||||||||| ||||| ||||||  | ||||| ||||||||| |||||||||    
T  2414490 caaaggttagttggcaagcttatatacctctcacatactagacctgatgttgcttttgatgtaagcttagttagccaattcatgcaccaatcaaaggaga 2414589  T
Q  111 ttcatttacaagttgcactcagagttgttcaatatttgaatggacccc----------gatcttgtttgaatagaatggaa-tgtgggacttgaagcata 199  Q
    |||||||||| |  |||||  || |||| ||||||||||| ||| |||           || ||||| |||  |||||||| ||||||| ||||||||||    
T  2414590 ttcatttacatgccgcacttcgaattgtgcaatatttgaaaggaaccccaggtagaggaattttgttcgaaaggaatggaagtgtgggagttgaagcata 2414689  T
Q  200 tattgatattgactatgcaggatcagttgtggataggaaattgactacatgatattgcacttttctatgtgataatcttatgacttggaaaagtaaaaaa 299  Q
     | ||||   |||||||||   ||| |||||||||||| || ||||||| ||||||||||||| ||  ||   || ||| ||||||||||||||||||||    
T  2414690 cactgatgcggactatgcaaagtcaattgtggataggagatcgactacaagatattgcactttcctgggtaggaaccttgtgacttggaaaagtaaaaaa 2414789  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 27204346 - 27204207
Alignment:
Q  11 caaaggttagttaacaaactgatatacctatcacatattaggtctgatgttgcttttgttgtaatcttagtcggtcaatttatgcaccaaccaaaggaga 110  Q
    |||||||||||   |||||| ||||| |||||||||| |||  |||||||||  ||||| |||| || |||| | ||| | ||||||| |||||||||||    
T  27204346 caaaggttagtcggcaaacttatatatctatcacatactagacctgatgttggctttgtagtaagctaagtcagccaagtcatgcacctaccaaaggaga 27204247  T
Q  111 ttcatttacaagttgcactcagagttgttcaatatttgaa 150  Q
    | ||||||| |||||||||| || |||| |||||||||||    
T  27204246 tgcatttactagttgcactccgaattgtgcaatatttgaa 27204207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 18120 - 18241
Alignment:
Q  26 aaactgatatacctatcacatattaggtctgatgttgcttttgttgtaatcttagtcggtcaatttatgcaccaaccaaaggagattcatttacaagttg 125  Q
    ||||| |||||| ||||||||| |||  ||||| |||| |||||||||||||||| | | ||| | ||||||||||||||||||||||| | ||||  ||    
T  18120 aaacttatatacttatcacatactagacctgatattgcatttgttgtaatcttagacagccaactcatgcaccaaccaaaggagattcactaacaaactg 18219  T
Q  126 cactcagagttgttcaatattt 147  Q
    ||||| || ||||||| |||||    
T  18220 cactccgaattgttcagtattt 18241  T

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Target: scaffold0118; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 18296 - 18405
Alignment:
Q  190 ttgaagcatatattgatattgactatgcaggatcagttgtggataggaaattgactacatgatattgcacttttctatgtgataatcttatgacttggaa 289  Q
    ||||| |||||| | || |||||||||||  |||| ||||||||| || ||  |||||| | ||||||||||||||  ||| || |||||||  ||||||    
T  18296 ttgaatcatatactaatgttgactatgcaacatcaattgtggataagacatcaactacaggctattgcacttttctgggtggtattcttatggattggaa 18395  T
Q  290 aagtaaaaaa 299  Q
     |||||||||    
T  18396 gagtaaaaaa 18405  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 7813112 - 7813024
Alignment:
Q  210 gactatgcaggatcagttgtggataggaaattgactacatgatattgcacttttctatgtgataatcttatgacttggaaaagtaaaaaa 299  Q
    ||||||| ||| ||| |||||||||||| ||  |||||| ||||||||||||| ||| |||  || ||| |||||||||||| |||||||    
T  7813112 gactatgaagggtcaattgtggataggagatc-actacaagatattgcactttcctaggtgggaaccttgtgacttggaaaaataaaaaa 7813024  T

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