View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17468_high_18 (Length: 336)
Name: NF17468_high_18
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 41788274 - 41788574
Alignment:
| Q |
15 |
acttcacataaccctttgctggtggtttccaattcgtatccgtaacaatctgctgtacagcaggagttgccttgttgactcgaacagcagatagccattc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41788274 |
acttcacataaccctttgctggtggtttccaattcgtatccgtaacaatctgttgtacagcaggagttgccttgttgactcgaacag---atagccattc |
41788370 |
T |
|
| Q |
115 |
ccttaacgtgtcccgcactagctgaatggatatgtgtggctccttcacctcttcatgccacaccttttcgttacgtctccgccatagacaccacatgatc |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41788371 |
ccttaacgtgtcccgcgctagctgaatggatatgtgtggctccttcacctcgtcatgccacaccttttcgttacatctccgccatagacaccacatgatc |
41788470 |
T |
|
| Q |
215 |
atgatgatatatgtcaccgcatctttggataacctgcagaaaattgaaaagaacaggtatgcaaaatcagctgcattgttgacagaaccagcaattgttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41788471 |
atgatgatatatgtcaccgcatctttggataacctgcagaaaattgaaaagaacaggtctgcaaaatcagctgcattgttgacagaaccagcaattgttt |
41788570 |
T |
|
| Q |
315 |
ccca |
318 |
Q |
| |
|
|||| |
|
|
| T |
41788571 |
ccca |
41788574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 28481154 - 28480983
Alignment:
| Q |
143 |
gatatgtgtggctccttcacctcttcatgccacaccttttcgttacgtctccgccatagacaccacatgatcatgatgatatatgtcaccgcatctttgg |
242 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||| |
|
|
| T |
28481154 |
gatatatgtggctccttcgcctcgtcatgccacaccttttcgttacgtctccgccatagacattacaggatcatgatgatatttgtcaccacatctctgg |
28481055 |
T |
|
| Q |
243 |
ataacctgcagaaaattgaaaagaacaggtatgcaaaatcagctgcattgttgacagaaccagcaattgttt |
314 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||| ||| ||||||||||| |
|
|
| T |
28481054 |
ataacctgcagaaatttgaaaagaacaggtttgcaaaatcagctgcggtgttaacaaaactagcaattgttt |
28480983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University