View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_high_24 (Length: 306)
Name: NF17468_high_24
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_high_24 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 6915737 - 6916043
Alignment:
| Q |
1 |
caaccaatcaacaaagtacacatttttcatataattc-cagtgtcccataataagtcatagaccagtgttcaaaatgtgctccctccagaaatcaccacg |
99 |
Q |
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| T |
6915737 |
caaccaatcaacaaagtacacatttttcatataattctcagtgtcccataataagtcgtagaccagtgttcaaaatgtgctccctccagaaatcaccacg |
6915836 |
T |
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| Q |
100 |
tctcagaataaaacaaacacataccaaaaatcataaaacaagtaacacacggagtaaaccttcaaacattatcacactacaaccgaccaaagaaattttt |
199 |
Q |
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| T |
6915837 |
tctcagaataaaacaaacacataacaaaaatcataaaacaagaaacacacggagtaaaccttcaaacattatcacactacaaccgaccaaagaaattttt |
6915936 |
T |
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| Q |
200 |
gatttttcatattaacttagggccttgagttactaatacactgaatgcaaaccaattacaacagatgttattgctgacaacacaatacttcaaacaccaa |
299 |
Q |
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| T |
6915937 |
gatttttcatattaacttagggccttgagttactaatacactgaatgcaaaccaattacaacagatgttattgctgacaacacaatacttcaaacaccaa |
6916036 |
T |
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| Q |
300 |
tttcagc |
306 |
Q |
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| T |
6916037 |
tttcagc |
6916043 |
T |
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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 152381 - 152325
Alignment:
| Q |
152 |
agtaaaccttcaaacattatcacactacaaccgaccaaagaaatttttgatttttca |
208 |
Q |
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| T |
152381 |
agtaaaccttcaaacgttatcaccatacagcctatcaaagaaattttcgatttttca |
152325 |
T |
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