View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17468_high_27 (Length: 250)

Name: NF17468_high_27
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17468_high_27
NF17468_high_27
[»] chr7 (2 HSPs)
chr7 (1-234)||(40451696-40451931)
chr7 (144-188)||(41242163-41242206)
[»] chr2 (1 HSPs)
chr2 (144-188)||(2220097-2220140)
[»] chr4 (7 HSPs)
chr4 (144-188)||(13159699-13159742)
chr4 (144-188)||(16736169-16736213)
chr4 (144-188)||(46191195-46191238)
chr4 (145-221)||(20177379-20177456)
chr4 (144-177)||(135821-135854)
chr4 (144-220)||(36825778-36825855)
chr4 (144-188)||(44546662-44546705)
[»] chr6 (1 HSPs)
chr6 (144-188)||(16477626-16477670)
[»] chr5 (3 HSPs)
chr5 (144-188)||(21825240-21825284)
chr5 (144-188)||(23257199-23257242)
chr5 (144-188)||(37268367-37268410)
[»] chr3 (1 HSPs)
chr3 (144-188)||(7638885-7638928)
[»] chr1 (1 HSPs)
chr1 (144-188)||(20819603-20819646)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 40451696 - 40451931
Alignment:
Q  1 ataaagttcacatgttttctagtgaatagtgattgtaatgtttttattttctttcatataatggaaacaaatattgagttaaggtaggttcagtgtagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40451696 ataaagttcacatgttttctagtgaatagtgattgtaatgtttttattttctttcatataatggaaacaaatattgagttaaggtaggttcagtgtagtt 40451795  T
Q  101 atttcgctcatgaaagcaataaaagtgttgg-nnnnnnnnnnnnaacaaatcaaaatggattatattgctcaaacgaataagtgattcatc-cgcataag 198  Q
    |||||||| ||||||||||||||||||||||             |||||||||||||||||||||||| |||||||||||||||||||| | |  ||||     
T  40451796 atttcgcttatgaaagcaataaaagtgttggattttatttttttaacaaatcaaaatggattatattgttcaaacgaataagtgattcacctcaaataaa 40451895  T
Q  199 atatgttaaagtgataaatcacacattctgttcata 234  Q
     | || ||||||||||||||||||| ||||||||||    
T  40451896 gtgtgctaaagtgataaatcacacaatctgttcata 40451931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 41242163 - 41242206
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||    
T  41242163 aacaaatcaaaatggaatatattactcaaacgaa-aagtgattca 41242206  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 2220097 - 2220140
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  2220097 aacaaatcaaaatggattatattgctcaaacgaa-aagtgattca 2220140  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 13159699 - 13159742
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||    
T  13159699 aacaaatcaaaatggaatatattgctcaaacgaa-aagtgattca 13159742  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 16736169 - 16736213
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||| ||||||||||||||||||| || |||||||    
T  16736169 aacaaatcaaaatgaattatattgctcaaacgaaaaaatgattca 16736213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 46191195 - 46191238
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||    
T  46191195 aacaaatcaaaatggaatatattgctcaaacgaa-aagtgattca 46191238  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 20177379 - 20177456
Alignment:
Q  145 acaaatcaaaatggattatattgctcaaacgaataagtgattcatc-cgcataagatatgtt-aaagtgataaatcaca 221  Q
    |||||||||||| || |||||||||||| |||| |||||||||| | |||| |||||||||| |||||||| |||||||    
T  20177379 acaaatcaaaatcgaatatattgctcaatcgaa-aagtgattcacctcgcacaagatatgttaaaagtgatgaatcaca 20177456  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 135821 - 135854
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaa 177  Q
    |||||||||||||||| |||||||||||||||||    
T  135821 aacaaatcaaaatggaatatattgctcaaacgaa 135854  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 36825778 - 36825855
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca-tccgcataagatatgttaaagtgataaatcac 220  Q
    |||||||||||||||| ||||||||||  ||||| | ||||||||  ||| ||||| | |||||||||||| ||||||    
T  36825778 aacaaatcaaaatggaatatattgctcgcacgaaaaggtgattcaccccgtataaggtgtgttaaagtgatgaatcac 36825855  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 44546705 - 44546662
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||    
T  44546705 aacaaatcaaaatggaatatattgctcaaaggaa-aagtgattca 44546662  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 16477626 - 16477670
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||| ||||||||||||| ||| | ||||||||    
T  16477626 aacaaatcaaaatggaatatattgctcaaaagaaaaggtgattca 16477670  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 21825284 - 21825240
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||| ||||||||||||| ||| | ||||||||    
T  21825284 aacaaatcaaaatggaatatattgctcaaaagaaaaggtgattca 21825240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 23257242 - 23257199
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||||    
T  23257242 aacaaatcaaaatggaatatattgttcaaacgaa-aagtgattca 23257199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 37268410 - 37268367
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||    
T  37268410 aacaaatcaaaatggaatatattgctcaaaggaa-aagtgattca 37268367  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 7638885 - 7638928
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||    
T  7638885 aacaaatcaaaatggaatatattactcaaacgaa-aagtgattca 7638928  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 20819603 - 20819646
Alignment:
Q  144 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 188  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||    
T  20819603 aacaaatcaaaatggaatatattgctcaaaagaa-aagtgattca 20819646  T

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