View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_high_32 (Length: 239)
Name: NF17468_high_32
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 46262650 - 46262808
Alignment:
| Q |
63 |
tcacagacccaagcaaaagaacaacaccataacggcgaccaacccccacaaaaatctgaaggtacataaatgactgctaacttgcttaaataaacaattt |
162 |
Q |
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| T |
46262650 |
tcacagacccaagcaaaagaacaacaccataatggcgaccaacccccacaaaaatctgaaggtacataaatgactgctaacttgcttaaataaacaattt |
46262749 |
T |
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| Q |
163 |
atctatacgttcctgtatggtcgtcattttttgttgtcgataaatatatacactataag |
221 |
Q |
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| T |
46262750 |
atctatacgttcctgtatggtcgtcattttttgttgtcgataaatatatacactataag |
46262808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46262588 - 46262628
Alignment:
| Q |
1 |
taaccagaaaccaacgtgaaaccaacacaagcccctctcga |
41 |
Q |
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| T |
46262588 |
taaccaaaaagcaacgtgaaaccagcacaagcccctctcga |
46262628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 37707896 - 37707957
Alignment:
| Q |
81 |
gaacaacaccataacggcgaccaaccc-ccacaaaaatctgaaggtacataaatgactgcta |
141 |
Q |
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| T |
37707896 |
gaacaacacaacaacagcgaccaaccctccacaaaaatctgaaagtacatgaatgactgcta |
37707957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 55129383 - 55129308
Alignment:
| Q |
64 |
cacagacccaagcaaaagaacaacaccataacggcgaccaacccccacaaaaatctgaaggtacataaatgactgct |
140 |
Q |
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| T |
55129383 |
cacagacacaaacaaacgaacaacacaacaacggagaccagcccc-acagaaatctgaaggtacatgaatgactgct |
55129308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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