View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17468_high_7 (Length: 444)

Name: NF17468_high_7
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17468_high_7
NF17468_high_7
[»] chr3 (9 HSPs)
chr3 (282-400)||(242053-242171)
chr3 (19-135)||(242412-242528)
chr3 (143-209)||(242247-242313)
chr3 (374-429)||(52895431-52895486)
chr3 (400-429)||(242009-242038)
chr3 (386-419)||(21720916-21720949)
chr3 (370-419)||(29270461-29270510)
chr3 (364-419)||(43079981-43080037)
chr3 (364-400)||(45331240-45331276)
[»] chr1 (6 HSPs)
chr1 (19-116)||(6927141-6927240)
chr1 (384-419)||(45267448-45267483)
chr1 (372-416)||(28870210-28870254)
chr1 (375-419)||(36178519-36178563)
chr1 (364-400)||(37712172-37712208)
chr1 (364-419)||(48819282-48819338)
[»] chr8 (6 HSPs)
chr8 (364-419)||(9130943-9130998)
chr8 (364-428)||(34286610-34286675)
chr8 (364-419)||(13265467-13265523)
chr8 (364-416)||(32213069-32213122)
chr8 (364-400)||(9131073-9131109)
chr8 (364-415)||(28879045-28879097)
[»] chr2 (3 HSPs)
chr2 (371-419)||(9140656-9140704)
chr2 (384-421)||(18276912-18276949)
chr2 (372-419)||(37419900-37419947)
[»] chr6 (3 HSPs)
chr6 (372-419)||(2034285-2034332)
chr6 (364-429)||(10874089-10874154)
chr6 (367-397)||(25779933-25779963)
[»] chr4 (14 HSPs)
chr4 (372-419)||(28663411-28663458)
chr4 (374-419)||(36740887-36740932)
chr4 (364-419)||(7148755-7148811)
chr4 (372-419)||(488440-488487)
chr4 (364-419)||(34633495-34633550)
chr4 (372-415)||(52274176-52274219)
chr4 (364-405)||(896967-897009)
chr4 (389-419)||(3564189-3564219)
chr4 (371-429)||(10046344-10046402)
chr4 (384-429)||(825655-825700)
chr4 (387-416)||(48667710-48667739)
chr4 (364-419)||(28074348-28074404)
chr4 (364-400)||(38876067-38876103)
chr4 (372-416)||(39932810-39932854)
[»] chr7 (3 HSPs)
chr7 (364-419)||(47511026-47511082)
chr7 (363-416)||(33288145-33288199)
chr7 (389-425)||(38372521-38372557)
[»] chr5 (5 HSPs)
chr5 (364-415)||(6125274-6125326)
chr5 (364-411)||(17657233-17657281)
chr5 (375-419)||(28625463-28625507)
chr5 (374-406)||(35083241-35083273)
chr5 (375-419)||(42706779-42706823)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 282 - 400
Target Start/End: Complemental strand, 242171 - 242053
Alignment:
Q  282 cattataatcataagagcataatttcaaacagagcagcgaataaactaagatgataacaagcacttttcataagcttatcaaatgaataaacataaaagt 381  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  242171 cattataatcataagagcataatttcaaacagagcagcaaataaactaagatgataacaaacacttttcataagcttatcaaatgaataaacataaaagt 242072  T
Q  382 taatttatttgcataagct 400  Q
    | |||||||||||||||||    
T  242071 ttatttatttgcataagct 242053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 242528 - 242412
Alignment:
Q  19 atgtttgcatttaaactcaattaaaattgtgtaaacatagagtaatgaattgagagtgtctctctatcatcagagtctaattgtagaatgtgtaccacta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  242528 atgtttgcatttaaactcaattaaaattgtgtaaacatagagtattgaattgacagtgtctctctatcatcagagtctaattgtagaatgtgtaccacta 242429  T
Q  119 gaaatgataaacataaa 135  Q
     ||||||||||||||||    
T  242428 caaatgataaacataaa 242412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 242313 - 242247
Alignment:
Q  143 ttcattctcattacaacaacaacaacctaaaagcaaaatcacaatcaagtcctactcccccttgaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  242313 ttcattctcattacaacaacaacaacctaaaagcaaaatcacaatcaagtcctactcccacttgaag 242247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 429
Target Start/End: Original strand, 52895431 - 52895486
Alignment:
Q  374 ataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 429  Q
    ||||||||| ||||||||||||||||| ||||  ||| |||||||| |||||||||    
T  52895431 ataaaagtttatttatttgcataagctaaaaattaaggcaatccaaacaagcccta 52895486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 429
Target Start/End: Complemental strand, 242038 - 242009
Alignment:
Q  400 tcaaaaacaagtcaatccaagcaagcccta 429  Q
    ||||||||||||||||||||||||||||||    
T  242038 tcaaaaacaagtcaatccaagcaagcccta 242009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 21720949 - 21720916
Alignment:
Q  386 ttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    ||||||||||||||| ||||||||||||||||||    
T  21720949 ttatttgcataagcttaaaaacaagtcaatccaa 21720916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 29270461 - 29270510
Alignment:
Q  370 aaacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    ||||||||||| | ||||||||||||||||| ||||| ||| ||||||||    
T  29270461 aaacataaaagcttatttatttgcataagctaaaaaataagccaatccaa 29270510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 43079981 - 43080037
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||||| ||||||||| | ||||||||||||||||| ||||| ||| ||||||||    
T  43079981 atgaataacacataaaagcttatttatttgcataagctaaaaaataagacaatccaa 43080037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 45331276 - 45331240
Alignment:
Q  364 atgaataaacataaaagttaatttatttgcataagct 400  Q
    |||||| |||||||||||| |||||||||||||||||    
T  45331276 atgaattaacataaaagtttatttatttgcataagct 45331240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 6927240 - 6927141
Alignment:
Q  19 atgtttgcatttaaactcaattaaaatt---gtgtaaacatagagtaatgaattgagagtgtctctctatcatcagagtctaattgtagaatgtgtacca 115  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||  ||||||| ||| |||| || |||||||||||||||||||||||||||||||    
T  6927240 atgtttgcatttaaactcaattaaaattttagtgtaaacatagagtatggaattgacagtatctc-ctctcatcagagtctaattgtagaatgtgtacca 6927142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 419
Target Start/End: Complemental strand, 45267483 - 45267448
Alignment:
Q  384 atttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    ||||||||||||||||||||||| ||||||||||||    
T  45267483 atttatttgcataagctcaaaaataagtcaatccaa 45267448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 28870254 - 28870210
Alignment:
Q  372 acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 416  Q
    ||||||| ||| ||||||||||||||||||||||| ||| |||||    
T  28870254 acataaatgtttatttatttgcataagctcaaaaataagccaatc 28870210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 36178563 - 36178519
Alignment:
Q  375 taaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||| | ||||||||||||||||||||||  ||||||||||||    
T  36178563 taaaagcttatttatttgcataagctcaaaagtaagtcaatccaa 36178519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 37712172 - 37712208
Alignment:
Q  364 atgaataaacataaaagttaatttatttgcataagct 400  Q
    |||||| |||||||||||| |||||||||||||||||    
T  37712172 atgaattaacataaaagtttatttatttgcataagct 37712208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 48819338 - 48819282
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||||| |||| |||| | ||||||||||||||||||||||| ||| ||||||||    
T  48819338 atgaataatacattaaagctcatttatttgcataagctcaaaaataagccaatccaa 48819282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 9130998 - 9130943
Alignment:
Q  364 atgaataaacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||| |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  9130998 atgaattaacataaaagtttatttatttgcataagctcaaaatcaagtcaatccaa 9130943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 428
Target Start/End: Original strand, 34286610 - 34286675
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagccct 428  Q
    |||||||| ||||||||| | |||||||| |||||||||||||| |||||||||||| || |||||    
T  34286610 atgaataatacataaaagcttatttatttacataagctcaaaaataagtcaatccaaacaggccct 34286675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 13265523 - 13265467
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||||| ||||||||| | |||||||||||||| ||| |||||||||||||||||    
T  13265523 atgaataatacataaaagcttatttatttgcataaactcgaaaacaagtcaatccaa 13265467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 32213069 - 32213122
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 416  Q
    |||||||| ||||||||| | ||||||||||||||||| ||||| |||||||||    
T  32213069 atgaataatacataaaagcttatttatttgcataagcttaaaaataagtcaatc 32213122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 9131109 - 9131073
Alignment:
Q  364 atgaataaacataaaagttaatttatttgcataagct 400  Q
    |||||| |||||||||||| |||||||||||||||||    
T  9131109 atgaattaacataaaagtttatttatttgcataagct 9131073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 28879097 - 28879045
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaat 415  Q
    |||||||| ||||||||| | ||||||||||||||||||||||| ||| ||||    
T  28879097 atgaataatacataaaagcttatttatttgcataagctcaaaaataagccaat 28879045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 9140704 - 9140656
Alignment:
Q  371 aacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  9140704 aacataaaagtttatttatatgcataagctcaaaaataagtcaatccaa 9140656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 18276949 - 18276912
Alignment:
Q  384 atttatttgcataagctcaaaaacaagtcaatccaagc 421  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18276949 atttatttgcataagctcaaaaataagtcaatccaagc 18276912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 37419947 - 37419900
Alignment:
Q  372 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    ||||||||| | ||||||||||||||||||||||  ||||||||||||    
T  37419947 acataaaagcttatttatttgcataagctcaaaattaagtcaatccaa 37419900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 2034285 - 2034332
Alignment:
Q  372 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  2034285 acataaaagcttatttatttgcataagctcaaaaacaagccaatccaa 2034332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 10874089 - 10874154
Alignment:
Q  364 atgaataaacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 429  Q
    |||||| |||||||||| | ||||||||||||||||| ||||| |||||| ||||| || ||||||    
T  10874089 atgaattaacataaaagcttatttatttgcataagctaaaaaataagtcattccaaacaggcccta 10874154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 397
Target Start/End: Original strand, 25779933 - 25779963
Alignment:
Q  367 aataaacataaaagttaatttatttgcataa 397  Q
    |||||||||||||||||||||||||||||||    
T  25779933 aataaacataaaagttaatttatttgcataa 25779963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 28663458 - 28663411
Alignment:
Q  372 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  28663458 acataaaagctcatttatttgcataagctcaaaaataagtcaatccaa 28663411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 36740932 - 36740887
Alignment:
Q  374 ataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    ||||||| | ||||||||||||||||||||||| ||||||||||||    
T  36740932 ataaaagcttatttatttgcataagctcaaaaataagtcaatccaa 36740887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 7148811 - 7148755
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||||| ||||||||| | ||||||||||||||||||||||| ||| ||||||||    
T  7148811 atgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaa 7148755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 488440 - 488487
Alignment:
Q  372 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    ||||||||| | | ||||||||||||||||||||| ||||||||||||    
T  488440 acataaaagcttacttatttgcataagctcaaaaataagtcaatccaa 488487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 34633495 - 34633550
Alignment:
Q  364 atgaataaacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||| |||||||||| | |||||||||| |||||| ||||| ||||||||||||    
T  34633495 atgaattaacataaaagcttatttatttgcgtaagcttaaaaataagtcaatccaa 34633550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 52274176 - 52274219
Alignment:
Q  372 acataaaagttaatttatttgcataagctcaaaaacaagtcaat 415  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||    
T  52274176 acataaaagtttatttatttgcataagctcaaaaataagccaat 52274219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 897009 - 896967
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaa 405  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  897009 atgaataatacataaaagtttatttatttgcataagctcaaaa 896967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 3564219 - 3564189
Alignment:
Q  389 tttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||||||||||||||||||||||||||||    
T  3564219 tttgcataagctcaaaaacaagtcaatccaa 3564189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 10046344 - 10046402
Alignment:
Q  371 aacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 429  Q
    |||||||||| | | |||||| |||||||||||||| |||| |||| ||||||||||||    
T  10046344 aacataaaagcttaattatttacataagctcaaaaataagttaatcgaagcaagcccta 10046402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 825700 - 825655
Alignment:
Q  384 atttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 429  Q
    ||||||||||||||||||||||| ||| |||||||| || ||||||    
T  825700 atttatttgcataagctcaaaaagaagccaatccaaacaggcccta 825655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Complemental strand, 48667739 - 48667710
Alignment:
Q  387 tatttgcataagctcaaaaacaagtcaatc 416  Q
    ||||||||||||||||||||||||||||||    
T  48667739 tatttgcataagctcaaaaacaagtcaatc 48667710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 28074404 - 28074348
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||||| ||||||||| | ||||||||||||||||  ||||| ||||||||||||    
T  28074404 atgaataatacataaaagcttatttatttgcataagcgaaaaaataagtcaatccaa 28074348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 38876103 - 38876067
Alignment:
Q  364 atgaataaacataaaagttaatttatttgcataagct 400  Q
    |||||| |||||||||||| |||||||||||||||||    
T  38876103 atgaattaacataaaagtttatttatttgcataagct 38876067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 39932810 - 39932854
Alignment:
Q  372 acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 416  Q
    ||||||||||| ||||||||||||||| | ||||| |||||||||    
T  39932810 acataaaagtttatttatttgcataagtttaaaaataagtcaatc 39932854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 47511082 - 47511026
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||||| ||||||||| | ||||||||||||||||||||||| ||| ||||||||    
T  47511082 atgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaa 47511026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 33288145 - 33288199
Alignment:
Q  363 aatgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 416  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||| | |||||||    
T  33288145 aatgaataatacataaaagcttatttatttgcataagctcaaaaatatgtcaatc 33288199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 38372557 - 38372521
Alignment:
Q  389 tttgcataagctcaaaaacaagtcaatccaagcaagc 425  Q
    |||||||||||||||||| |||||||||||| |||||    
T  38372557 tttgcataagctcaaaaataagtcaatccaaacaagc 38372521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 6125326 - 6125274
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaat 415  Q
    |||||||| ||||||||||| |||||||| |||||| ||||||| ||||||||    
T  6125326 atgaataatacataaaagtttatttatttacataagttcaaaaataagtcaat 6125274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 17657281 - 17657233
Alignment:
Q  364 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagt 411  Q
    |||||||| ||||||||| | ||||||||||||||| ||||||||||||    
T  17657281 atgaataatacataaaagcttatttatttgcataagttcaaaaacaagt 17657233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 28625507 - 28625463
Alignment:
Q  375 taaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||| | ||||||||||||||||| ||||| ||||||||||||    
T  28625507 taaaagcttatttatttgcataagctaaaaaataagtcaatccaa 28625463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 35083273 - 35083241
Alignment:
Q  374 ataaaagttaatttatttgcataagctcaaaaa 406  Q
    ||||||||| |||||||||||||||||||||||    
T  35083273 ataaaagtttatttatttgcataagctcaaaaa 35083241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 42706823 - 42706779
Alignment:
Q  375 taaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 419  Q
    |||||| | ||||||||||||||||||||||| ||| ||||||||    
T  42706823 taaaagcttatttatttgcataagctcaaaaataagccaatccaa 42706779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University