View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_low_14 (Length: 374)
Name: NF17468_low_14
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 35449842 - 35450204
Alignment:
| Q |
1 |
aaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaacaaaatgctccactttccggagtttcaagcattgaagatgaacaagttacaag |
100 |
Q |
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| T |
35449842 |
aaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggagtttcaagcattgaagatgaacaagttacaag |
35449941 |
T |
|
| Q |
101 |
aaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttcaccaattattgatcaatcaatgattgaagta |
200 |
Q |
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| T |
35449942 |
aaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttcaccaattattgatcaatcaatgattgaagta |
35450041 |
T |
|
| Q |
201 |
ctaacaccaaatagaccactacctgaaaaaggtaaacttttgcaggcagtgatgaaagctggtcctcttcttaaaactcttcttcttgcaggaccacttc |
300 |
Q |
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| T |
35450042 |
ctaacaccaaatagaccactacctgaaaaaggtaaacttttgcaggcagtgatgaaagctggtcctcttcttaaaactcttcttcttgcaggaccacttc |
35450141 |
T |
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| Q |
301 |
ctcaatggaaacaccctcctccacctcttgagtcttttgagattccacctgtctctataccta |
363 |
Q |
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| T |
35450142 |
ctcaatggaaacaccctcctccacctcttgagtcttttgagattccacctgtctctataccta |
35450204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 353
Target Start/End: Complemental strand, 21010434 - 21010303
Alignment:
| Q |
222 |
cctgaaaaaggtaaacttttgcaggcagtgatgaaagctggtcctcttcttaaaactcttcttcttgcaggaccacttcctcaatggaaacaccctcctc |
321 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||| | ||| | || ||| | |||||||||||| | |||||||||| ||| || || | |
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| T |
21010434 |
cctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcctttgcttcagacccttttacttgcaggaccattacctcaatggagacatccaccac |
21010335 |
T |
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| Q |
322 |
cacctcttgagtcttttgagattccacctgtc |
353 |
Q |
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|||| | |||||||||||||||||||||||| |
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| T |
21010334 |
caccattggagtcttttgagattccacctgtc |
21010303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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