View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17468_low_19 (Length: 335)
Name: NF17468_low_19
Description: NF17468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17468_low_19 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 6 - 335
Target Start/End: Complemental strand, 21243191 - 21242861
Alignment:
| Q |
6 |
gaggagcagcac-agacccaatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaaccca |
104 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21243191 |
gaggagcagcaccagacccaatactcttcaaagaagaaacatcatatttcccaaccacactctgtttcgctaaagcaagaatcatcggtggcacaaccca |
21243092 |
T |
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| Q |
105 |
caagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtat |
204 |
Q |
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| T |
21243091 |
caagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtat |
21242992 |
T |
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| Q |
205 |
gttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacg |
304 |
Q |
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| T |
21242991 |
gttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatccatgtttatcatcaacg |
21242892 |
T |
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| Q |
305 |
atgctgcgatgaagttcttgtgtgtgagaat |
335 |
Q |
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| T |
21242891 |
acgctgcgatgaagttcttgtgtgtgagaat |
21242861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 332
Target Start/End: Complemental strand, 21258939 - 21258633
Alignment:
| Q |
22 |
ccaatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttat |
121 |
Q |
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| T |
21258939 |
ccaatactcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccacaaagttgtcactctat |
21258840 |
T |
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| Q |
122 |
acttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatcc |
221 |
Q |
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| T |
21258839 |
acttttcaatcaccttcaaaaa-ccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctgcgcgtatgttataaccgccaatct |
21258741 |
T |
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| Q |
222 |
aaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgcgatgaagttc |
321 |
Q |
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| T |
21258740 |
aaacacatgaaacatcggtaaaacgcagaggaacac---atttaattcccctgctaaatcatcatccatgtttatcatcaatgaagtcgcgatgaagttc |
21258644 |
T |
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| Q |
322 |
ttgtgtgtgag |
332 |
Q |
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||||| ||||| |
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| T |
21258643 |
ttgtgggtgag |
21258633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 101 - 304
Target Start/End: Complemental strand, 21254357 - 21254152
Alignment:
| Q |
101 |
cccacaagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgc |
200 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| || |
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| T |
21254357 |
cccacaaattcgtcactctatgcttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctgcgc |
21254259 |
T |
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| Q |
201 |
gtatgttataaccgccaatccaaacacatg---aaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatc |
297 |
Q |
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||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||| |
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| T |
21254258 |
gtatgttataaccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgtccatgttaatc |
21254159 |
T |
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| Q |
298 |
atcaacg |
304 |
Q |
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|| |||| |
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| T |
21254158 |
attaacg |
21254152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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